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NC_041929.1__YP_009601356.1__FDH46_gp247__00231

Bact-Vir

NC_041929.1__YP_009601356.1__FDH46_gp247__00231

Identity

Accession:
NC_041929 ↗
Kingdom:
phage

Quality

79.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-136
PDB
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.75 32.0 4.01e-01 91.7% 64.3%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.58 28.0 3.76e-01 73.7% 93.7%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.52 34.0 3.92e-01 91.7% 90.8%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 30.0 3.77e-01 75.2% 100.0%
1r0mA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 35.0 3.62e-01 92.5% 73.1%
3w7tA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.50 41.0 3.48e-01 89.5% 92.7%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 37.0 3.98e-01 82.0% 89.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4108772 243.3.1.10 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2 0.72 26.0 3.53e-01 89.5% 60.0%
4965032 375.1.1.343 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7835 0.66 29.0 4.38e-01 82.7% 100.0%
4973114 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.53 33.0 3.83e-01 91.0% 86.3%
3923143 633.23.1.17 alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA 0.53 40.0 3.29e-01 79.7% 93.8%
3546354 5.1.4.164 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.51 39.0 2.77e-01 79.7% 32.2%
3999197 5.1.4.164 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.50 40.0 2.88e-01 83.5% 37.8%
D2 medium residues 145-185
PDB