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NC_041929.1__YP_009601415.1__FDH46_gp188__00290
Bact-VirNC_041929.1__YP_009601415.1__FDH46_gp188__00290
Identity
- Accession:
- NC_041929 ↗
- Kingdom:
- phage
Quality
87.0
mean pLDDT
Taxonomy
TaxID: 1647403
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-65
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wy5A02 | 1.20.59.20 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › | 0.69 | 53.0 | 4.63e-01 | 82.5% | 64.9% |
| 4ye6A02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.66 | 48.0 | 4.95e-01 | 76.2% | 98.3% |
| 3kuqA00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.66 | 46.0 | 3.31e-01 | 74.6% | 38.0% |
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.65 | 46.0 | 4.18e-01 | 76.2% | 61.8% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.64 | 44.0 | 4.19e-01 | 71.4% | 80.0% |
| 1htjF00 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.63 | 47.0 | 3.42e-01 | 81.0% | 40.7% |
| 1xriA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.62 | 44.0 | 3.32e-01 | 74.6% | 54.3% |
| 4dccA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 43.0 | 4.10e-01 | 77.8% | 87.8% |
| 5jcpB01 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.57 | 43.0 | 3.16e-01 | 85.7% | 39.0% |
| 2ovjA00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.55 | 44.0 | 3.22e-01 | 93.7% | 52.7% |
| 2e52B01 | 3.40.91.70 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Type II restriction endonuclease, HindIII | 0.55 | 44.0 | 3.06e-01 | 90.5% | 58.9% |
| 2j16A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 36.0 | 2.97e-01 | 71.4% | 77.4% |
| 1hh8A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 39.0 | 2.95e-01 | 84.1% | 97.4% |
| 2ksnA01 | 1.20.225.20 | Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Ub domain-containing protein, DC-UbP/UBTD2, N-terminal domain | 0.53 | 42.0 | 3.96e-01 | 95.2% | 71.8% |
| 2fmyA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 38.0 | 3.56e-01 | 81.0% | 100.0% |
| 1np7A02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 36.0 | 3.09e-01 | 79.4% | 99.2% |
| 1g4uS01 | 1.20.120.260 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain | 0.51 | 37.0 | 3.14e-01 | 84.1% | 74.0% |
| 4ev0A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 41.0 | 3.91e-01 | 96.8% | 97.4% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3713911 | 2007.2.3.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase2 | 0.61 | 43.0 | 3.17e-01 | 76.2% | 44.3% |
| 3600013 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.61 | 51.0 | 4.08e-01 | 92.1% | 74.2% |
| None | — | 0.59 | 42.0 | 3.16e-01 | 76.2% | 51.2% | |
| 1566530 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.59 | 49.0 | 4.61e-01 | 96.8% | 96.3% |
| 3273958 | 198.1.1.10 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin | 0.59 | 48.0 | 4.48e-01 | 96.8% | 90.6% |
| 3416434 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.59 | 45.0 | 3.13e-01 | 88.9% | 46.9% |
| 3573652 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 40.0 | 4.33e-01 | 76.2% | 92.0% |
| 3492209 | 189.1.1.2 ↗ | alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP | 0.56 | 39.0 | 2.84e-01 | 76.2% | 35.8% |
| 3269593 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.56 | 46.0 | 4.37e-01 | 98.4% | 90.0% |
| 3277060 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.56 | 47.0 | 4.50e-01 | 100.0% | 97.3% |
| 3895346 | 101.1.2.575 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25894 | 0.54 | 39.0 | 3.35e-01 | 81.0% | 82.7% |
| 3392391 | 101.1.2.397 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_MCM8 | 0.53 | 41.0 | 3.95e-01 | 87.3% | 89.3% |
| 3270290 | 189.1.1.2 ↗ | alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP | 0.53 | 45.0 | 3.25e-01 | 100.0% | 55.1% |
| 4016522 | 101.1.2.359 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD | 0.52 | 40.0 | 3.54e-01 | 87.3% | 84.0% |
| 5040940 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 39.0 | 3.46e-01 | 88.9% | 67.6% |