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NC_041929.1__YP_009601444.1__FDH46_gp159__00319

Bact-Vir

NC_041929.1__YP_009601444.1__FDH46_gp159__00319

Identity

Accession:
NC_041929 ↗
Kingdom:
phage

Quality

80.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-54
PDB
Domain cluster: representative
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.82 73.0 5.65e-01 100.0% 59.0%
5d18A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.80 71.0 4.77e-01 100.0% 27.7%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.80 54.0 4.65e-01 74.1% 46.9%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.79 70.0 6.61e-01 100.0% 93.8%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.77 70.0 4.81e-01 100.0% 30.7%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.76 58.0 5.19e-01 81.5% 60.3%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.75 59.0 5.28e-01 100.0% 61.5%
2efeA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.74 60.0 5.31e-01 94.4% 61.7%
2e9xB02 1.20.58.1020 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 53.0 4.16e-01 81.5% 37.6%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.73 56.0 5.40e-01 81.5% 78.3%
2wdqC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.72 60.0 4.79e-01 100.0% 47.9%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.70 59.0 4.74e-01 96.3% 68.2%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 53.0 4.60e-01 81.5% 59.3%
6vynC01 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.69 55.0 5.05e-01 100.0% 66.2%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.68 52.0 4.74e-01 98.1% 61.3%
3k2jA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.68 55.0 4.23e-01 88.9% 48.8%
6qumQ00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.68 57.0 5.18e-01 98.1% 68.9%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 53.0 4.69e-01 88.9% 59.7%
2b0hA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.67 53.0 4.04e-01 88.9% 36.7%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 56.0 4.69e-01 100.0% 54.2%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.65 57.0 4.66e-01 100.0% 71.8%
4i9oA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.65 54.0 4.85e-01 94.4% 70.5%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.65 52.0 4.93e-01 88.9% 73.4%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.65 48.0 5.05e-01 79.6% 91.8%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 53.0 4.76e-01 98.1% 64.6%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.64 56.0 4.65e-01 100.0% 60.2%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 53.0 4.45e-01 96.3% 53.3%
1l1lA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.64 56.0 3.24e-01 100.0% 77.1%
4alyB00 1.10.3160.10 Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 0.64 54.0 3.76e-01 96.3% 62.6%
2jaeA03 1.20.1440.240 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.64 51.0 4.18e-01 88.9% 55.4%
4toiA02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.64 42.0 4.44e-01 74.1% 77.1%
2bl2A00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.63 52.0 3.91e-01 100.0% 48.1%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.63 54.0 5.28e-01 94.4% 86.2%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 51.0 4.86e-01 88.9% 85.5%
7dukB01 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 46.0 4.94e-01 81.5% 91.3%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.63 48.0 4.04e-01 92.6% 45.5%
3bt5A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.62 53.0 3.91e-01 98.1% 82.1%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.62 56.0 3.84e-01 100.0% 37.2%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.62 53.0 4.17e-01 94.4% 48.2%
2itbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.62 53.0 3.66e-01 100.0% 92.4%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.62 47.0 4.11e-01 87.0% 52.8%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.61 52.0 5.00e-01 96.3% 82.8%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 52.0 4.26e-01 98.1% 50.0%
2yqyA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.60 53.0 4.04e-01 100.0% 84.9%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 48.0 4.31e-01 92.6% 64.4%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.59 50.0 4.59e-01 94.4% 88.7%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 51.0 4.59e-01 100.0% 73.7%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.59 46.0 4.38e-01 85.2% 98.4%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.59 47.0 3.94e-01 96.3% 98.1%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.59 50.0 4.73e-01 100.0% 100.0%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.59 48.0 4.68e-01 92.6% 86.9%
1is8A01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.58 48.0 4.74e-01 100.0% 96.7%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.58 48.0 4.44e-01 100.0% 78.7%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.58 50.0 4.27e-01 98.1% 78.9%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.57 51.0 3.04e-01 100.0% 83.7%
2nrkA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 43.0 3.22e-01 94.4% 29.7%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.56 49.0 4.67e-01 98.1% 95.3%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 47.0 4.31e-01 100.0% 70.3%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 46.0 3.66e-01 100.0% 49.6%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3308343 1008.1.1.27 alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › COPIIcoated_ERV 0.89 82.0 7.28e-01 100.0% 77.3%
4501780 310.2.1.5 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › DUF842 0.88 79.0 5.89e-01 100.0% 42.4%
3584995 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.86 79.0 6.97e-01 100.0% 78.7%
3189791 601.19.1.18 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Mmc1_C 0.84 76.0 4.89e-01 100.0% 23.5%
3697477 7581.1.1.7 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Ketoacyl-synt_C 0.84 78.0 4.65e-01 100.0% 15.9%
3734711 7581.1.1.3 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt,Ketoacyl-synt_C 0.84 78.0 4.24e-01 100.0% 7.1%
4964755 5069.1.3.1 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt 0.82 71.0 5.41e-01 100.0% 42.4%
3784055 192.24.1.0 alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain 0.81 72.0 5.41e-01 100.0% 43.1%
3242033 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.79 65.0 5.32e-01 100.0% 50.0%
3630756 5043.1.1.2 extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › SPC12 0.79 70.0 6.41e-01 100.0% 78.6%
3287159 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.76 67.0 5.66e-01 100.0% 65.6%
3331225 5042.1.1.0 extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region 0.75 64.0 5.89e-01 96.3% 100.0%
5058468 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.75 64.0 5.87e-01 100.0% 72.0%
4648753 605.1.1.278 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Attractin 0.75 62.0 6.03e-01 100.0% 83.3%
171404 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.75 59.0 5.28e-01 100.0% 61.5%
4631780 192.7.1.4 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C 0.75 58.0 5.57e-01 81.5% 73.3%
3947226 283.2.1.10 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29514 0.74 62.0 4.73e-01 96.3% 40.8%
4373203 605.1.1.131 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Val_tRNA-synt_C 0.74 56.0 5.29e-01 81.5% 67.7%
3926367 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.72 61.0 3.86e-01 100.0% 18.0%
3739454 192.5.1.38 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › NEDD4_Bsd2 0.71 50.0 4.03e-01 83.3% 38.1%
5016874 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.71 60.0 4.39e-01 100.0% 33.8%
3286725 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.70 50.0 3.44e-01 75.9% 22.7%
3624243 1076.1.1.2 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Aph-1 0.69 61.0 3.89e-01 100.0% 58.1%
3329547 604.6.1.22 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › EMC4 0.69 61.0 4.84e-01 100.0% 49.1%
4626442 7010.1.1.0 alpha arrays › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator 0.69 57.0 5.58e-01 92.6% 91.7%
4663621 603.2.1.0 alpha bundles › STAT-like › STAT › STAT 0.69 58.0 4.34e-01 94.4% 38.5%
3927398 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.69 59.0 4.82e-01 100.0% 52.4%
4356636 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.68 59.0 5.45e-01 100.0% 97.1%
4106620 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.68 55.0 4.96e-01 88.9% 72.0%
3255820 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.68 57.0 3.61e-01 100.0% 98.3%
3593724 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 54.0 4.16e-01 88.9% 56.0%
5082565 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.67 55.0 5.22e-01 100.0% 98.6%
3402099 5043.2.1.5 extended segments › Sensor proteins transmembrane domains › NarQ transmembrane domain › NarQ transmembrane domain › ATP_synt_H 0.67 56.0 5.14e-01 100.0% 73.3%
4647835 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.67 57.0 3.76e-01 98.1% 90.9%
3491670 614.1.1.0 alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain 0.66 57.0 5.73e-01 100.0% 98.2%
144301 5041.1.1.1 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.66 54.0 4.98e-01 96.3% 69.9%
3962505 601.33.1.1 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD 0.66 56.0 3.70e-01 100.0% 41.6%
4024396 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.65 57.0 4.20e-01 96.3% 37.8%
3597909 5094.1.1.0 a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like 0.65 55.0 4.36e-01 100.0% 48.3%
3221764 603.2.1.0 alpha bundles › STAT-like › STAT › STAT 0.65 53.0 4.62e-01 88.9% 62.5%
4024356 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.65 56.0 4.04e-01 98.1% 60.6%
5045310 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.65 53.0 4.87e-01 88.9% 75.7%
5012157 605.1.1.354 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MS_channel_1st_1 0.63 50.0 4.56e-01 100.0% 65.9%
3596712 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.63 57.0 4.07e-01 100.0% 56.0%
4214655 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.63 56.0 4.93e-01 100.0% 71.2%
4967342 375.1.9.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase 0.63 52.0 4.54e-01 94.4% 61.2%
4987417 622.1.1.0 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.61 52.0 4.72e-01 96.3% 69.3%
3969893 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.60 52.0 4.92e-01 96.3% 98.5%
5006936 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.60 51.0 4.90e-01 100.0% 92.3%