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NC_041929.1__YP_009601452.1__FDH46_gp151__00327
Bact-VirNC_041929.1__YP_009601452.1__FDH46_gp151__00327
Identity
- Accession:
- NC_041929 ↗
- Kingdom:
- phage
Quality
85.9
mean pLDDT
Taxonomy
TaxID: 1647403
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-59
Domain cluster:
rep: MH727593.1__AXY83340.1__X__00023__D71-122
D2
high
residues 68-118
Domain cluster:
rep: MH727593.1__AXY83340.1__X__00023__D71-122
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yweA04 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.71 | 48.0 | 3.69e-01 | 80.4% | 31.6% |
| 1ljoA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 55.0 | 4.81e-01 | 90.2% | 90.7% |
| 5eqjB01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.64 | 49.0 | 4.46e-01 | 86.3% | 87.3% |
| 4o1sA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.59 | 42.0 | 3.00e-01 | 78.4% | 37.6% |
| 5xyib00 | 2.20.25.100 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27 | 0.58 | 43.0 | 3.74e-01 | 80.4% | 65.9% |
| 2r7kA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.56 | 46.0 | 4.48e-01 | 100.0% | 91.8% |
| 1yleA02 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.55 | 48.0 | 4.44e-01 | 100.0% | 95.4% |
| 3wcyA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 43.0 | 3.80e-01 | 96.1% | 74.4% |
| 6grqA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 45.0 | 3.75e-01 | 100.0% | 75.8% |
| 4gklA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 42.0 | 3.72e-01 | 100.0% | 72.7% |
| 2e3vA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 44.0 | 3.58e-01 | 100.0% | 68.0% |
| 1tdqA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 3.70e-01 | 100.0% | 81.1% |
| 2aehA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 41.0 | 3.48e-01 | 96.1% | 89.6% |
| 1c4pC00 | 3.10.20.180 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 41.0 | 3.25e-01 | 100.0% | 83.3% |
| 5ccbA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.51 | 41.0 | 3.85e-01 | 100.0% | 100.0% |
| 3pv7A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 40.0 | 3.29e-01 | 100.0% | 79.7% |
| 3lb6C01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 39.0 | 3.48e-01 | 96.1% | 71.6% |
| 1ogpA02 | 2.60.40.650 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 42.0 | 3.30e-01 | 100.0% | 69.3% |
| 5e55B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 41.0 | 3.50e-01 | 98.0% | 77.4% |
| 3f83A03 | 2.60.40.2040 | Mainly Beta › Sandwich › Immunoglobulin-like › CFA/I fimbrial subunit E, pilin domain | 0.50 | 40.0 | 3.06e-01 | 100.0% | 86.8% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4120000 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.68 | 49.0 | 3.75e-01 | 80.4% | 32.0% |
| 3953172 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.67 | 56.0 | 3.86e-01 | 100.0% | 27.0% |
| 4664342 | 12.1.1.35 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Melibiase_C | 0.62 | 52.0 | 4.28e-01 | 100.0% | 65.0% |
| 4458466 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.59 | 49.0 | 4.14e-01 | 100.0% | 81.1% |
| 3518673 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.58 | 46.0 | 3.79e-01 | 100.0% | 87.8% |
| 5035793 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 47.0 | 4.28e-01 | 92.2% | 87.1% |
| 3657989 | 10.12.1.9 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC | 0.58 | 44.0 | 2.73e-01 | 90.2% | 17.1% |
| 3512974 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.57 | 45.0 | 4.33e-01 | 88.2% | 80.0% |
| 4003887 | 10.7.1.0 ↗ | beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 | 0.57 | 45.0 | 3.73e-01 | 94.1% | 74.0% |
| 3948061 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.55 | 46.0 | 4.47e-01 | 100.0% | 98.3% |
| 3269322 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.54 | 42.0 | 3.14e-01 | 100.0% | 68.6% |
| 3801700 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 37.0 | 2.40e-01 | 76.5% | 15.5% |
| 5035099 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 44.0 | 3.60e-01 | 96.1% | 78.0% |
| 3620532 | 3529.1.1.6 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Band_7 | 0.53 | 38.0 | 3.92e-01 | 94.1% | 82.0% |
| 4300471 | 101.1.9.83 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM | 0.53 | 37.0 | 3.02e-01 | 76.5% | 37.1% |
| 5066011 | 7584.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding | 0.52 | 38.0 | 2.94e-01 | 80.4% | 46.4% |
| 3394618 | 10.10.1.1 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT | 0.52 | 36.0 | 2.85e-01 | 74.5% | 72.5% |
| 3918983 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.52 | 42.0 | 3.55e-01 | 100.0% | 80.0% |
| 3884793 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.52 | 36.0 | 3.84e-01 | 92.2% | 100.0% |
| 3395045 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.51 | 40.0 | 2.98e-01 | 92.2% | 46.7% |
| 4942979 | 11.1.1.284 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 | 0.51 | 42.0 | 3.66e-01 | 100.0% | 75.3% |