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NC_041943.1__YP_009602774.1__FDH60_gp31__00031
Bact-VirNC_041943.1__YP_009602774.1__FDH60_gp31__00031
Identity
- Accession:
- NC_041943 ↗
- Kingdom:
- phage
Quality
69.2
mean pLDDT
Taxonomy
TaxID: 1772304
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 204-264
Domain cluster:
rep: MK279841.1__AZS06678.1__SEA_HIYAA_38__00038__D115-177
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yjkC00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.70 | 53.0 | 3.94e-01 | 82.0% | 77.7% |
| 2qqyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.69 | 51.0 | 3.96e-01 | 80.3% | 83.3% |
| 3iq1B00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.69 | 52.0 | 3.86e-01 | 82.0% | 76.7% |
| 2db0B00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.67 | 56.0 | 3.72e-01 | 95.1% | 23.7% |
| 2yw6B00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.67 | 51.0 | 3.84e-01 | 83.6% | 82.0% |
| 3khyA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.66 | 58.0 | 4.07e-01 | 98.4% | 70.1% |
| 1bgcA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.65 | 49.0 | 3.65e-01 | 82.0% | 63.9% |
| 2a2fX02 | 1.20.58.670 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D | 0.65 | 54.0 | 4.29e-01 | 95.1% | 67.4% |
| 3axsA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.64 | 49.0 | 3.14e-01 | 85.2% | 16.5% |
| 3vnxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.64 | 49.0 | 3.52e-01 | 85.2% | 64.1% |
| 1w63A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.63 | 52.0 | 3.06e-01 | 96.7% | 19.0% |
| 2pqrA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.63 | 53.0 | 4.64e-01 | 95.1% | 91.4% |
| 4j0eA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 47.0 | 3.32e-01 | 82.0% | 34.7% |
| 5bqnA02 | 1.20.1120.10 | Mainly Alpha › Up-down Bundle › "Clostridium botulinum neurotoxin B, ""coiled-coil"" domain" › "Clostridium botulinum neurotoxin b, ""coiled-coil"" domain" | 0.62 | 51.0 | 3.21e-01 | 95.1% | 86.7% |
| 3ztaA00 | 1.10.490.130 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.62 | 53.0 | 4.17e-01 | 100.0% | 85.6% |
| 2c2uA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.61 | 48.0 | 3.48e-01 | 86.9% | 65.7% |
| 3r2kA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.61 | 44.0 | 3.40e-01 | 80.3% | 74.7% |
| 3iekA02 | 3.40.50.10890 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 43.0 | 3.06e-01 | 75.4% | 25.8% |
| 2i0mA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.60 | 45.0 | 3.90e-01 | 85.2% | 84.9% |
| 1tjoB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 46.0 | 3.40e-01 | 86.9% | 86.9% |
| 4omfA00 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.59 | 45.0 | 2.78e-01 | 85.2% | 88.1% |
| 3s64A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.59 | 40.0 | 3.76e-01 | 73.8% | 75.3% |
| 4wzxA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.59 | 45.0 | 4.27e-01 | 85.2% | 77.3% |
| 4yzwA01 | 1.20.1370.10 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Hemocyanin, N-terminal domain | 0.59 | 48.0 | 3.74e-01 | 96.7% | 43.0% |
| 1nklA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.58 | 40.0 | 3.78e-01 | 73.8% | 76.9% |
| 3bjdA01 | 1.10.1240.20 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain | 0.57 | 47.0 | 4.27e-01 | 100.0% | 94.3% |
| 2wfpA03 | 1.10.441.10 | Mainly Alpha › Orthogonal Bundle › Phosphomannose Isomerase; domain 2 › Phosphomannose Isomerase, domain 2 | 0.56 | 43.0 | 3.56e-01 | 85.2% | 53.1% |
| 4nuuB02 | 1.20.58.830 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 41.0 | 3.40e-01 | 83.6% | 77.2% |
| 2zttA00 | 6.10.140.720 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 43.0 | 4.12e-01 | 86.9% | 87.7% |
| 4ehsA00 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.51 | 38.0 | 3.20e-01 | 86.9% | 72.6% |
| 1i7dA01 | 3.40.50.140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 41.0 | 3.18e-01 | 95.1% | 73.1% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3927392 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.67 | 47.0 | 4.34e-01 | 75.4% | 68.8% |
| 5047951 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 57.0 | 4.08e-01 | 100.0% | 44.2% |
| 3697127 | 4048.1.1.1 ↗ | alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel | 0.65 | 54.0 | 5.18e-01 | 100.0% | 81.4% |
| 3424083 | 109.46.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) | 0.64 | 51.0 | 4.06e-01 | 93.4% | 70.0% |
| 5028878 | 3896.1.1.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase | 0.60 | 48.0 | 3.56e-01 | 93.4% | 78.9% |
| None | — | 0.57 | 48.0 | 3.22e-01 | 100.0% | 30.2% | |
| 3691453 | 4033.1.1.1 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N | 0.56 | 41.0 | 3.35e-01 | 85.2% | 39.2% |
| 4810004 | 4984.1.1.2 ↗ | alpha bundles › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › DBL_C | 0.56 | 43.0 | 3.31e-01 | 85.2% | 70.8% |
| 3792970 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.54 | 36.0 | 3.93e-01 | 82.0% | 95.6% |
| 3220382 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 44.0 | 3.75e-01 | 100.0% | 93.9% |
| 3926897 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.53 | 46.0 | 3.87e-01 | 100.0% | 57.1% |
D2
medium
residues 88-161
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vqeN00 | 4.10.830.10 | Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal Protein S14/S29 | 0.61 | 36.0 | 3.89e-01 | 74.3% | 71.7% |