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NC_041945.1__YP_009602919.1__FDH62_gp53__00053

Bact-Vir

NC_041945.1__YP_009602919.1__FDH62_gp53__00053

Identity

Accession:
NC_041945 ↗
Kingdom:
phage

Quality

66.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Korravirus› Arthrobacter_phage_Pumancara

TaxID: 1772311

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-107
PDB
Domain cluster: rep: JN698994.1__AER47592.1__DS6A_38__00038__D2-76
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ftrA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 44.0 4.18e-01 70.9% 99.0%
2pd1A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 44.0 4.28e-01 72.1% 100.0%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 38.0 3.72e-01 72.1% 53.1%
1y6kR01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 40.0 3.80e-01 73.3% 52.9%
4dpoB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 42.0 4.07e-01 73.3% 100.0%
1y0hB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 40.0 3.89e-01 70.9% 99.0%
3bm7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 40.0 3.78e-01 70.9% 91.5%
6u7jA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 34.0 3.41e-01 73.3% 55.1%
1f94A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.58 39.0 4.28e-01 96.5% 95.2%
2e26A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 38.0 3.21e-01 74.4% 38.1%
1ywhC03 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.57 48.0 4.78e-01 98.8% 92.0%
1hqz800 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.56 40.0 3.51e-01 89.5% 48.5%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.55 36.0 3.98e-01 72.1% 88.9%
3fezA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 47.0 3.87e-01 100.0% 81.7%
1xfjA00 3.60.140.10 Alpha Beta › 4-Layer Sandwich › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases 0.54 45.0 3.35e-01 96.5% 89.5%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 40.0 3.47e-01 77.9% 71.1%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.44e-01 72.1% 58.7%
3f44A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 44.0 3.43e-01 100.0% 82.4%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942261 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.67 46.0 4.45e-01 72.1% 98.0%
5184 304.4.1.11 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD 0.64 44.0 4.18e-01 70.9% 99.0%
4928084 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.63 44.0 4.26e-01 72.1% 100.0%
5042803 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 41.0 3.80e-01 72.1% 52.7%
3686598 11.1.1.939 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7137 0.58 39.0 3.16e-01 70.9% 35.3%
5003158 2.5.1.1 ↗ beta barrels › OB-fold › Inorganic pyrophosphatase › Inorganic pyrophosphatase › Pyrophosphatase 0.57 48.0 4.22e-01 95.3% 100.0%
5041452 303.1.1.1 ↗ a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.56 48.0 4.06e-01 100.0% 81.7%
3757685 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.55 44.0 4.42e-01 100.0% 91.8%
3493644 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.55 38.0 3.11e-01 72.1% 72.7%
3216375 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 43.0 4.40e-01 95.3% 91.8%
3553704 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.54 45.0 4.52e-01 100.0% 93.3%
4465843 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 45.0 4.53e-01 100.0% 95.6%
3918851 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.53 36.0 3.23e-01 70.9% 56.8%
3920804 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 38.0 4.10e-01 100.0% 100.0%
4405647 304.61.1.2 ↗ a+b two layers › Alpha-beta plaits › Aldoxime dehydratase › Aldoxime dehydratase › Monooxy_af470-like 0.51 38.0 2.99e-01 80.2% 65.5%
3891071 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 38.0 4.04e-01 100.0% 97.3%
3758503 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.50 39.0 3.99e-01 97.7% 92.5%
D2 high residues 130-187
PDB
Domain cluster: rep: MK279841.1__AZS06678.1__SEA_HIYAA_38__00038__D115-177