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NC_041946.1__YP_009602957.1__FDH63_gp30__00030

Bact-Vir

NC_041946.1__YP_009602957.1__FDH63_gp30__00030

Identity

Accession:
NC_041946 ↗
Kingdom:
phage

Quality

71.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Korravirus› Arthrobacter_phage_Wayne

TaxID: 1772322

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-78
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 66.0 6.24e-01 100.0% 88.2%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 65.0 5.69e-01 100.0% 64.3%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 65.0 6.22e-01 100.0% 83.1%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 64.0 6.45e-01 100.0% 94.7%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 64.0 6.52e-01 100.0% 98.2%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 66.0 6.50e-01 100.0% 95.0%
2creA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 65.0 6.07e-01 100.0% 80.3%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 62.0 6.17e-01 100.0% 91.5%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 66.0 6.11e-01 100.0% 80.0%
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 50.0 5.43e-01 100.0% 89.1%
1xovA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 63.0 6.01e-01 98.2% 89.4%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.73 64.0 4.31e-01 100.0% 27.5%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 65.0 6.16e-01 100.0% 90.9%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 62.0 5.40e-01 100.0% 62.8%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 65.0 6.14e-01 100.0% 89.4%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 63.0 6.03e-01 100.0% 96.9%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 64.0 6.04e-01 100.0% 84.8%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 62.0 5.99e-01 100.0% 89.1%
2i0nA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 62.0 6.19e-01 100.0% 96.5%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 62.0 5.60e-01 100.0% 71.8%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 60.0 5.90e-01 100.0% 90.0%
2dlpA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 62.0 5.40e-01 100.0% 65.9%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 60.0 5.68e-01 100.0% 87.1%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 58.0 5.54e-01 100.0% 79.4%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 61.0 5.88e-01 100.0% 88.9%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 59.0 5.74e-01 100.0% 85.9%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 49.0 2.93e-01 94.6% 48.5%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 41.0 3.43e-01 78.6% 83.6%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 3.82e-01 100.0% 60.9%
2c5qA00 3.50.30.40 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like 0.58 42.0 2.78e-01 78.6% 60.3%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.58 47.0 3.78e-01 98.2% 60.6%
3es1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 42.0 3.38e-01 100.0% 38.9%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 47.0 3.78e-01 100.0% 79.7%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 44.0 3.46e-01 100.0% 39.6%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 3.85e-01 100.0% 67.5%
1ultB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.53 45.0 2.70e-01 98.2% 52.5%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.53 41.0 3.72e-01 85.7% 85.5%
4dovA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.52 39.0 2.99e-01 89.3% 61.8%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.51 39.0 3.81e-01 85.7% 95.2%
5h5oA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 41.0 3.34e-01 100.0% 44.0%
2zuoA09 2.30.30.570 Mainly Beta › Roll › SH3 type barrels. › 0.51 41.0 4.04e-01 96.4% 93.7%
4ckmB00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.50 38.0 2.96e-01 85.7% 90.3%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3918340 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.80 71.0 6.59e-01 100.0% 81.4%
3509345 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.79 69.0 5.55e-01 96.4% 54.3%
3873942 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 70.0 6.66e-01 98.2% 86.2%
4031435 4.1.1.143 ↗ beta barrels › SH3 › SH3 › SH3 › TagH_SH3-like 0.79 68.0 6.49e-01 100.0% 83.1%
3908789 4.1.1.354 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.79 71.0 4.44e-01 100.0% 23.9%
3923675 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.78 69.0 6.61e-01 100.0% 87.7%
3510029 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 68.0 6.66e-01 96.4% 95.0%
3396896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 69.0 6.27e-01 98.2% 78.7%
3759402 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 68.0 6.55e-01 100.0% 89.2%
423468 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 66.0 5.71e-01 100.0% 63.5%
1545880 4.1.1.278 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.76 66.0 5.91e-01 100.0% 75.0%
3557677 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 66.0 6.16e-01 100.0% 87.1%
3908332 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.75 68.0 6.46e-01 100.0% 86.2%
4680114 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 68.0 6.12e-01 100.0% 74.7%
2410170 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.75 67.0 6.44e-01 100.0% 95.2%
3222210 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.75 65.0 6.05e-01 100.0% 77.1%
3243949 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.75 68.0 6.63e-01 100.0% 93.3%
3549369 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 63.0 6.22e-01 96.4% 93.3%
3888226 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.74 66.0 6.01e-01 100.0% 76.0%
3514867 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 64.0 5.84e-01 100.0% 72.0%
3482683 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 64.0 6.31e-01 100.0% 90.0%
3529708 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 66.0 5.97e-01 100.0% 74.7%
5039349 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 63.0 6.21e-01 98.2% 98.3%
4446467 4.1.1.278 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.73 63.0 6.09e-01 100.0% 87.7%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 64.0 6.33e-01 100.0% 93.3%
3898952 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 65.0 5.87e-01 100.0% 74.7%
3880325 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.72 64.0 5.97e-01 98.2% 78.6%
3216019 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 64.0 6.09e-01 100.0% 95.4%
3587555 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 64.0 5.97e-01 100.0% 85.7%
3484007 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 64.0 5.92e-01 100.0% 80.0%
3782325 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.72 64.0 6.20e-01 100.0% 88.9%
4081631 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 65.0 5.84e-01 100.0% 74.7%
3234274 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 64.0 5.93e-01 100.0% 80.0%
1263586 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 61.0 5.64e-01 100.0% 84.7%
3904253 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 61.0 5.89e-01 100.0% 86.2%
3514043 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 61.0 5.56e-01 100.0% 76.0%
4982789 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.68 50.0 4.84e-01 100.0% 69.2%
3736953 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 60.0 5.73e-01 100.0% 92.3%
3931715 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 58.0 4.86e-01 100.0% 96.0%
4649321 865.1.1.1 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › B3_4 0.67 49.0 3.41e-01 85.7% 22.5%
4202116 865.1.1.1 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › B3_4 0.67 49.0 3.31e-01 85.7% 20.9%
3265780 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.64 46.0 4.59e-01 100.0% 73.3%
4432988 865.1.1.1 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › B3_4 0.62 47.0 3.25e-01 85.7% 53.3%
5037411 304.22.1.0 ↗ a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain 0.61 54.0 4.46e-01 100.0% 65.0%
5023638 821.1.1.4 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 0.60 51.0 3.85e-01 100.0% 48.7%
4996590 821.1.1.4 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 0.60 51.0 3.80e-01 100.0% 45.2%
4133951 3174.1.1.1 ↗ beta barrels › Ribosomal protein L14-like › Ribosomal protein L14-related › Ribosomal protein L14-related › Ribosomal_L14 0.59 47.0 3.58e-01 87.5% 57.1%
5041530 821.1.1.4 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 0.59 51.0 3.97e-01 100.0% 54.6%
3170723 220.1.1.95 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_PH 0.59 47.0 3.85e-01 92.9% 64.3%
3269834 220.1.1.95 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_PH 0.58 46.0 3.66e-01 91.1% 55.2%
4230268 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.58 42.0 4.50e-01 98.2% 97.8%
3492162 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.57 48.0 3.55e-01 100.0% 36.0%
3494269 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.57 48.0 2.96e-01 100.0% 15.7%
3717688 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.57 46.0 3.45e-01 100.0% 35.9%
3977412 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.56 43.0 4.50e-01 100.0% 98.0%
3919483 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.56 47.0 2.95e-01 100.0% 16.9%
3514819 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.56 46.0 2.95e-01 100.0% 18.0%
3613430 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.55 44.0 3.54e-01 100.0% 43.3%
3226649 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.55 46.0 3.19e-01 100.0% 27.0%
3916871 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.55 45.0 3.41e-01 100.0% 37.2%
3532264 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.54 44.0 3.31e-01 100.0% 34.8%
3779679 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.54 44.0 2.79e-01 100.0% 17.1%
5077869 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 46.0 3.52e-01 100.0% 94.1%
3259482 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 45.0 4.02e-01 100.0% 83.5%
4669352 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.53 44.0 3.54e-01 94.6% 85.5%
3396057 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.50 37.0 3.44e-01 85.7% 93.8%