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NC_041949.1__YP_009603189.1__FDH66_gp01__00001
Bact-VirNC_041949.1__YP_009603189.1__FDH66_gp01__00001
Identity
- Accession:
- NC_041949 ↗
- Kingdom:
- phage
Quality
75.2
mean pLDDT
Taxonomy
TaxID: 1772291
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-79
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2h41A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.73 | 47.0 | 4.34e-01 | 100.0% | 52.6% |
| 7y8sA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.71 | 46.0 | 4.34e-01 | 100.0% | 53.7% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.70 | 50.0 | 3.82e-01 | 100.0% | 33.7% |
| 3n40P04 | 2.60.40.2400 | Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, domain C | 0.69 | 38.0 | 3.97e-01 | 97.4% | 57.5% |
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.67 | 53.0 | 4.56e-01 | 100.0% | 54.6% |
| 1n26A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 40.0 | 3.99e-01 | 100.0% | 57.7% |
| 2jvuA00 | 2.60.40.2290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.66 | 43.0 | 3.99e-01 | 100.0% | 52.0% |
| 2v3sA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.66 | 58.0 | 5.41e-01 | 98.7% | 97.9% |
| 6kryA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.65 | 52.0 | 4.34e-01 | 88.3% | 78.3% |
| 4e9kA00 | 2.60.120.1350 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 | 0.65 | 42.0 | 3.01e-01 | 100.0% | 21.7% |
| 1jx4A04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.64 | 49.0 | 4.51e-01 | 100.0% | 63.3% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.62 | 47.0 | 4.23e-01 | 100.0% | 57.8% |
| 6cc0A01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.61 | 45.0 | 3.51e-01 | 77.9% | 95.1% |
| 1vjvA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.61 | 44.0 | 3.00e-01 | 77.9% | 87.5% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.61 | 41.0 | 4.18e-01 | 100.0% | 71.4% |
| 2bs2B01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.60 | 48.0 | 4.41e-01 | 90.9% | 95.3% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 41.0 | 4.17e-01 | 100.0% | 75.0% |
| 2xomA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.59 | 39.0 | 3.20e-01 | 100.0% | 35.9% |
| 1zoyB01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.58 | 46.0 | 4.22e-01 | 90.9% | 96.2% |
| 6lumB01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.58 | 45.0 | 4.15e-01 | 90.9% | 96.4% |
| 1kf6B01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.57 | 46.0 | 4.25e-01 | 92.2% | 95.2% |
| 2q18X02 | 3.90.850.10 | Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain | 0.56 | 44.0 | 3.28e-01 | 88.3% | 49.1% |
| 6usmB01 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.55 | 45.0 | 3.66e-01 | 89.6% | 89.1% |
| 2npnA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.55 | 36.0 | 3.31e-01 | 100.0% | 47.7% |
| 2vtfA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 36.0 | 2.83e-01 | 100.0% | 29.9% |
| 2nmlA00 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.54 | 48.0 | 4.45e-01 | 100.0% | 77.0% |
| 2qlcA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.54 | 46.0 | 4.04e-01 | 100.0% | 70.6% |
| 4geiA00 | 2.60.40.640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 44.0 | 3.56e-01 | 88.3% | 72.2% |
| 1ifqB00 | 3.30.450.50 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain | 0.54 | 42.0 | 3.60e-01 | 87.0% | 86.7% |
| 2pt7C01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.54 | 37.0 | 3.35e-01 | 72.7% | 94.3% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.53 | 43.0 | 4.06e-01 | 88.3% | 100.0% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.53 | 43.0 | 3.36e-01 | 88.3% | 83.2% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.53 | 41.0 | 3.91e-01 | 87.0% | 100.0% |
| 3f02B02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.53 | 40.0 | 3.71e-01 | 100.0% | 63.0% |
| 2e56A00 | 2.60.40.770 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 44.0 | 3.73e-01 | 100.0% | 88.9% |
| 2a74A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.52 | 41.0 | 3.77e-01 | 88.3% | 97.1% |
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 38.0 | 4.06e-01 | 85.7% | 94.0% |
| 2j3wC00 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.50 | 39.0 | 3.39e-01 | 89.6% | 89.6% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.68 | 46.0 | 4.97e-01 | 100.0% | 82.8% |
| 4946583 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.68 | 50.0 | 4.35e-01 | 100.0% | 52.2% |
| 4027095 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.67 | 53.0 | 5.15e-01 | 88.3% | 97.6% |
| 3217608 | 284.1.2.1 ↗ | a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C | 0.67 | 59.0 | 5.41e-01 | 98.7% | 97.0% |
| 4969863 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.67 | 44.0 | 4.53e-01 | 100.0% | 70.7% |
| 4990637 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.66 | 45.0 | 4.44e-01 | 100.0% | 65.1% |
| 3263365 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.66 | 52.0 | 5.15e-01 | 85.7% | 98.8% |
| 3210904 | 12.6.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related | 0.66 | 44.0 | 3.72e-01 | 100.0% | 40.0% |
| 4937773 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.64 | 44.0 | 4.90e-01 | 100.0% | 98.3% |
| 3734833 | 304.14.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) | 0.63 | 54.0 | 5.20e-01 | 100.0% | 97.8% |
| 4001737 | 11.1.1.888 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3, DB | 0.62 | 39.0 | 2.77e-01 | 100.0% | 21.8% |
| 3704397 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.62 | 49.0 | 4.77e-01 | 88.3% | 96.5% |
| 4160542 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.62 | 42.0 | 4.62e-01 | 100.0% | 96.6% |
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.61 | 42.0 | 4.64e-01 | 100.0% | 100.0% |
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.61 | 43.0 | 4.70e-01 | 100.0% | 96.7% |
| 3503544 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.61 | 47.0 | 4.31e-01 | 88.3% | 97.3% |
| 3251827 | 3570.1.1.0 ↗ | a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily | 0.60 | 49.0 | 4.02e-01 | 90.9% | 65.3% |
| 3965010 | 3115.4.1.1 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 | 0.60 | 42.0 | 4.00e-01 | 100.0% | 62.2% |
| 3177939 | 221.1.1.51 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_C2 | 0.60 | 47.0 | 4.63e-01 | 88.3% | 98.8% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.60 | 42.0 | 4.57e-01 | 100.0% | 98.3% |
| 5028185 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 40.0 | 4.01e-01 | 100.0% | 67.5% |
| 4644377 | 223.1.1.122 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HisKA | 0.59 | 44.0 | 3.18e-01 | 81.8% | 64.5% |
| 3508990 | 3115.3.1.2 ↗ | a+b two layers › GP2-like › P56 › P56 › DUF2922 | 0.59 | 44.0 | 4.72e-01 | 100.0% | 96.9% |
| 5067865 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.58 | 43.0 | 4.43e-01 | 100.0% | 87.1% |
| 3599185 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 46.0 | 4.24e-01 | 89.6% | 88.6% |
| 4031235 | 3986.2.1.2 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd › DUF2922 | 0.58 | 42.0 | 4.38e-01 | 100.0% | 87.1% |
| 3609926 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.57 | 45.0 | 3.86e-01 | 100.0% | 51.5% |
| 3702406 | 221.1.1.47 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2_3 | 0.57 | 45.0 | 4.02e-01 | 90.9% | 76.7% |
| 3285401 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.57 | 44.0 | 4.51e-01 | 90.9% | 86.7% |
| 3510040 | 3115.3.1.2 ↗ | a+b two layers › GP2-like › P56 › P56 › DUF2922 | 0.56 | 41.0 | 4.12e-01 | 100.0% | 77.5% |
| 4200618 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.55 | 48.0 | 4.26e-01 | 100.0% | 91.3% |
| 3892842 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.55 | 38.0 | 4.04e-01 | 100.0% | 86.2% |
| 4280109 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.55 | 47.0 | 4.11e-01 | 100.0% | 71.2% |
| 3682205 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 42.0 | 3.47e-01 | 88.3% | 72.4% |
| 5066749 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.53 | 41.0 | 3.01e-01 | 89.6% | 95.1% |
| 5072371 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 41.0 | 3.78e-01 | 84.4% | 92.0% |
| 5071765 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 39.0 | 3.42e-01 | 81.8% | 73.6% |
| 3797473 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.52 | 46.0 | 4.24e-01 | 100.0% | 97.0% |
| 3277197 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.52 | 45.0 | 4.28e-01 | 100.0% | 84.2% |
| 5048741 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 39.0 | 3.51e-01 | 81.8% | 80.9% |
| 4394681 | 862.1.1.4 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › RepB_primase | 0.51 | 45.0 | 3.35e-01 | 100.0% | 52.7% |
| 5074674 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 39.0 | 3.29e-01 | 84.4% | 62.1% |
| 4648475 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.51 | 36.0 | 3.92e-01 | 100.0% | 100.0% |
| 4209418 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 39.0 | 3.76e-01 | 88.3% | 98.9% |
| 5071935 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 38.0 | 3.28e-01 | 83.1% | 67.7% |
| 5053865 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.50 | 38.0 | 3.69e-01 | 100.0% | 72.2% |