←Back to structures

NC_041949.1__YP_009603225.1__FDH66_gp61__00037

Bact-Vir

NC_041949.1__YP_009603225.1__FDH66_gp61__00037

Identity

Accession:
NC_041949 ↗
Kingdom:
phage

Quality

77.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Amigovirus› Arthrobacter_phage_Amigo

TaxID: 1772291

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-161
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05257.23 best CHAP 32.9 9.90e-08 63.7% 97.5%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.79 76.0 7.47e-01 99.4% 97.0%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.69 64.0 5.68e-01 97.5% 79.9%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.69 26.0 4.19e-01 96.8% 93.2%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.69 62.0 5.83e-01 95.5% 94.6%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 51.0 5.51e-01 90.4% 100.0%
3m1uA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.61 55.0 5.36e-01 97.5% 92.4%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 28.0 3.87e-01 84.1% 100.0%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.55 36.0 4.25e-01 91.1% 95.5%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030940 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.88 80.0 8.05e-01 100.0% 94.2%
2141406 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.82 68.0 7.33e-01 99.4% 99.3%
1293874 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.79 75.0 7.42e-01 99.4% 96.4%
1905738 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.76 68.0 7.05e-01 98.7% 100.0%
4015238 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.73 56.0 6.24e-01 93.0% 100.0%
5018860 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.72 61.0 6.24e-01 95.5% 92.7%
3596620 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.70 64.0 5.93e-01 96.8% 93.8%
3716073 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.70 64.0 5.77e-01 96.8% 88.8%
1228348 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.70 64.0 5.84e-01 97.5% 85.9%
3598532 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.69 64.0 5.77e-01 97.5% 91.7%
3702189 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.69 62.0 5.60e-01 95.5% 92.4%
3615154 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.69 62.0 5.90e-01 96.2% 94.6%
5065747 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.69 36.0 4.64e-01 82.8% 87.8%
7408 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.69 62.0 5.85e-01 95.5% 91.3%
3591737 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.68 62.0 5.96e-01 96.8% 93.8%
3606829 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.67 62.0 5.60e-01 97.5% 82.0%
3838874 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.63 59.0 5.60e-01 100.0% 91.7%
5032809 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.63 35.0 3.81e-01 70.1% 64.6%
3393319 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 35.0 4.06e-01 89.8% 76.4%
4952498 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.62 37.0 4.49e-01 82.8% 91.9%
3385461 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.60 52.0 5.38e-01 95.5% 100.0%
3999725 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 30.0 3.96e-01 85.4% 90.6%
3727542 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 28.0 3.60e-01 89.2% 84.4%
3890362 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 26.0 3.72e-01 70.7% 100.0%
5079397 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 21.0 2.64e-01 82.8% 60.0%
3729666 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 30.0 3.52e-01 89.8% 83.6%
D2 high residues 194-335
PDB
Domain cluster: rep: NC_041875.1__YP_009594310.1__FDG92_gp21__00021__D5-180
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01510.31 best Amidase_2 54.7 1.80e-14 81.0% 97.7%
D3 high residues 347-452
PDB