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NC_041949.1__YP_009603228.1__FDH66_gp58__00040
Bact-VirNC_041949.1__YP_009603228.1__FDH66_gp58__00040
Identity
- Accession:
- NC_041949 ↗
- Kingdom:
- phage
Quality
86.3
mean pLDDT
Taxonomy
TaxID: 1772291
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-82
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7s03A01 | 1.10.10.1450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.77 | 54.0 | 5.83e-01 | 96.6% | 88.0% |
| 4u7bA01 | 1.10.10.1450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.76 | 57.0 | 6.06e-01 | 96.6% | 92.2% |
| 2mh2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 46.0 | 4.55e-01 | 100.0% | 68.8% |
| 2qm8A03 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.66 | 45.0 | 4.44e-01 | 72.9% | 67.7% |
| 1ci4A00 | 1.10.150.40 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF | 0.62 | 53.0 | 4.75e-01 | 100.0% | 88.6% |
| 4z4qA04 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.61 | 47.0 | 4.21e-01 | 100.0% | 57.3% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.61 | 47.0 | 4.42e-01 | 88.1% | 82.7% |
| 4eqqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 44.0 | 4.69e-01 | 94.9% | 95.8% |
| 5n17A01 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.60 | 47.0 | 4.06e-01 | 91.5% | 91.3% |
| 4g84A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.60 | 50.0 | 3.18e-01 | 98.3% | 30.9% |
| 7p2yd01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.59 | 50.0 | 4.28e-01 | 98.3% | 79.8% |
| 1g4wR02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.59 | 48.0 | 3.32e-01 | 93.2% | 85.5% |
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.58 | 43.0 | 4.16e-01 | 98.3% | 71.0% |
| 1j2zA02 | 1.20.1180.10 | Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain | 0.58 | 44.0 | 4.35e-01 | 89.8% | 91.0% |
| 1wh4A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.57 | 44.0 | 3.88e-01 | 86.4% | 86.2% |
| 2n80A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.57 | 44.0 | 3.96e-01 | 91.5% | 84.0% |
| 2l4eA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.56 | 33.0 | 3.43e-01 | 76.3% | 61.4% |
| 1t3dA01 | 1.10.3130.10 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 | 0.56 | 41.0 | 3.25e-01 | 83.1% | 69.3% |
| 4eeiA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.56 | 44.0 | 4.09e-01 | 100.0% | 67.9% |
| 2vk9A03 | 1.10.3730.30 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › | 0.55 | 43.0 | 3.79e-01 | 91.5% | 88.8% |
| 5hwoA00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.55 | 46.0 | 2.86e-01 | 100.0% | 85.4% |
| 3fblA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 43.0 | 4.00e-01 | 96.6% | 96.3% |
| 1kyoF00 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.53 | 37.0 | 3.48e-01 | 72.9% | 81.1% |
| 1pwkA00 | 3.30.740.10 | Alpha Beta › 2-Layer Sandwich › Protein Inhibitor Of Neuronal Nitric Oxide Synthase › Protein Inhibitor Of Neuronal Nitric Oxide Synthase; | 0.53 | 43.0 | 3.89e-01 | 96.6% | 84.6% |
| 1zoyD00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.53 | 38.0 | 3.30e-01 | 79.7% | 88.2% |
| 2m7bA00 | 1.10.10.1920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 43.0 | 4.04e-01 | 100.0% | 85.7% |
| 3mvpA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.52 | 37.0 | 4.02e-01 | 96.6% | 97.9% |
| 2r5sA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 37.0 | 3.33e-01 | 79.7% | 52.3% |
| 2fd5A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.51 | 36.0 | 3.89e-01 | 94.9% | 93.8% |
| 4k35A04 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.50 | 35.0 | 3.68e-01 | 76.3% | 88.0% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3937317 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.78 | 58.0 | 6.27e-01 | 96.6% | 94.0% |
| 3522325 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.77 | 58.0 | 5.61e-01 | 96.6% | 72.3% |
| 3545107 | 386.1.1.126 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_7th_ZNF462 | 0.75 | 48.0 | 5.36e-01 | 93.2% | 86.7% |
| 3684426 | 509.1.1.0 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain | 0.74 | 57.0 | 5.58e-01 | 84.7% | 95.4% |
| 4453959 | 101.1.1.379 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Phage_Mu_Gp27 | 0.73 | 64.0 | 5.44e-01 | 100.0% | 61.1% |
| 3217577 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.71 | 52.0 | 5.25e-01 | 96.6% | 78.3% |
| 3236431 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 59.0 | 5.66e-01 | 100.0% | 81.4% |
| 3212366 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.69 | 51.0 | 5.44e-01 | 94.9% | 96.0% |
| 4422529 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.68 | 57.0 | 3.98e-01 | 94.9% | 30.3% |
| 3240699 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.67 | 51.0 | 4.88e-01 | 96.6% | 70.0% |
| 4952808 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 51.0 | 5.31e-01 | 100.0% | 92.7% |
| 4864563 | 592.6.1.1 ↗ | alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug | 0.66 | 56.0 | 5.21e-01 | 98.3% | 83.1% |
| 5019593 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 51.0 | 4.52e-01 | 100.0% | 58.8% |
| 5021354 | 101.1.2.619 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_33 | 0.66 | 50.0 | 4.92e-01 | 94.9% | 76.9% |
| 4665790 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.66 | 54.0 | 3.88e-01 | 96.6% | 41.0% |
| 3815745 | 592.6.1.1 ↗ | alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug | 0.65 | 55.0 | 5.02e-01 | 96.6% | 81.2% |
| 3173405 | 592.6.1.0 ↗ | alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain | 0.65 | 55.0 | 5.24e-01 | 98.3% | 88.6% |
| 3220510 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.65 | 49.0 | 5.25e-01 | 100.0% | 100.0% |
| 3586929 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.64 | 50.0 | 3.88e-01 | 88.1% | 61.4% |
| 3234099 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.64 | 53.0 | 5.16e-01 | 94.9% | 84.6% |
| 3214724 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.64 | 53.0 | 5.17e-01 | 94.9% | 84.6% |
| 3234027 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.63 | 48.0 | 4.86e-01 | 94.9% | 83.3% |
| 4100609 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.63 | 54.0 | 3.93e-01 | 100.0% | 35.9% |
| 3464617 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 48.0 | 4.79e-01 | 100.0% | 85.0% |
| 4423880 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.62 | 53.0 | 3.82e-01 | 96.6% | 45.7% |
| 4411140 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.62 | 54.0 | 4.65e-01 | 100.0% | 65.3% |
| 4426593 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.62 | 52.0 | 3.84e-01 | 96.6% | 45.9% |
| 4108324 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.62 | 53.0 | 3.79e-01 | 100.0% | 32.6% |
| 3453546 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 47.0 | 4.63e-01 | 100.0% | 78.5% |
| 4310744 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.62 | 49.0 | 3.75e-01 | 94.9% | 36.3% |
| 4426999 | 563.1.1.0 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.62 | 54.0 | 4.71e-01 | 100.0% | 92.2% |
| 143586 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.61 | 47.0 | 4.42e-01 | 88.1% | 82.7% |
| 4468319 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.61 | 49.0 | 3.68e-01 | 89.8% | 49.3% |
| 3633660 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.61 | 51.0 | 3.20e-01 | 100.0% | 32.4% |
| 3684901 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.60 | 50.0 | 3.15e-01 | 100.0% | 33.0% |
| 4668514 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.60 | 51.0 | 3.88e-01 | 100.0% | 49.3% |
| 3930259 | 592.7.1.0 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain | 0.60 | 46.0 | 4.41e-01 | 98.3% | 72.0% |
| 4493137 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.58 | 47.0 | 3.43e-01 | 96.6% | 31.4% |
| 4150329 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.58 | 46.0 | 3.54e-01 | 89.8% | 49.0% |
| 4988855 | 3754.1.1.1 ↗ | alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4 | 0.56 | 46.0 | 3.01e-01 | 100.0% | 64.9% |