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NC_041949.1__YP_009603253.1__FDH66_gp33__00065

Bact-Vir

NC_041949.1__YP_009603253.1__FDH66_gp33__00065

Identity

Accession:
NC_041949 ↗
Kingdom:
phage

Quality

73.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Amigovirus› Arthrobacter_phage_Amigo

TaxID: 1772291

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-67
PDB
Domain cluster: rep: amazon_plume_scaffold_4_prodigal-single.1__X__X__00098__D6-72
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7k9cA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 59.0 5.18e-01 100.0% 57.0%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.77 65.0 6.47e-01 100.0% 88.9%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.75 57.0 5.21e-01 100.0% 62.3%
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.75 51.0 5.24e-01 73.3% 75.0%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.73 49.0 4.61e-01 75.0% 56.8%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 59.0 5.12e-01 100.0% 58.7%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 61.0 4.96e-01 100.0% 52.8%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 56.0 4.76e-01 100.0% 54.2%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.70 63.0 5.36e-01 100.0% 80.0%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.69 63.0 5.71e-01 100.0% 84.8%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 61.0 5.76e-01 100.0% 83.3%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 54.0 5.16e-01 88.3% 78.6%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 57.0 5.75e-01 100.0% 93.3%
1jb0E00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.68 61.0 5.85e-01 100.0% 91.3%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.68 61.0 4.51e-01 100.0% 50.3%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 57.0 5.46e-01 100.0% 80.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 59.0 5.81e-01 100.0% 92.2%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 58.0 5.70e-01 100.0% 89.4%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.66 59.0 4.42e-01 100.0% 50.0%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.66 60.0 5.76e-01 100.0% 92.6%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 56.0 5.32e-01 100.0% 80.8%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 58.0 5.69e-01 100.0% 93.8%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 57.0 5.56e-01 100.0% 98.5%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 52.0 5.32e-01 100.0% 94.7%
2i0nA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 53.0 5.42e-01 100.0% 96.5%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 57.0 5.50e-01 100.0% 91.0%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 56.0 5.49e-01 100.0% 92.2%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.62 47.0 4.71e-01 100.0% 83.3%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 49.0 4.75e-01 88.3% 86.8%
2rsoA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 42.0 3.76e-01 75.0% 51.1%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.25e-01 98.3% 100.0%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.59 43.0 4.54e-01 90.0% 92.2%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.59 44.0 4.36e-01 93.3% 76.6%
1ne8A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.59 50.0 4.12e-01 100.0% 73.3%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 43.0 4.44e-01 93.3% 87.5%
2ew0A00 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.58 48.0 3.59e-01 100.0% 80.0%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 42.0 4.36e-01 88.3% 85.7%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 43.0 4.48e-01 93.3% 94.2%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.57 48.0 4.10e-01 100.0% 75.2%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 41.0 4.31e-01 93.3% 94.1%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.74e-01 91.7% 93.6%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 47.0 4.39e-01 100.0% 84.2%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 42.0 4.23e-01 95.0% 89.8%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 39.0 3.38e-01 81.7% 63.5%
4z3xA03 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.53 40.0 2.87e-01 100.0% 26.9%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.53 41.0 4.12e-01 90.0% 84.4%
2ijd101 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 41.0 3.06e-01 93.3% 42.8%
7jptA05 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.51 43.0 3.40e-01 100.0% 87.0%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3625264 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 61.0 5.18e-01 100.0% 50.5%
4024915 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.81 61.0 5.96e-01 100.0% 73.8%
3795384 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 61.0 4.09e-01 100.0% 22.3%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 60.0 3.99e-01 100.0% 21.3%
3264808 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.79 59.0 5.65e-01 100.0% 68.6%
3703933 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.77 63.0 6.17e-01 100.0% 81.5%
3926207 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 60.0 6.31e-01 100.0% 94.3%
4966131 4.1.3.1 ↗ beta barrels › SH3 › SH3 › Calcium-binding protein CcbP › Calci_bind_CcbP 0.74 62.0 5.05e-01 100.0% 50.0%
163064 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.73 49.0 4.61e-01 75.0% 56.8%
3370389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 63.0 6.14e-01 100.0% 87.7%
3177469 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 64.0 6.07e-01 100.0% 82.9%
3941170 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.71 60.0 5.74e-01 100.0% 78.6%
3240407 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.71 60.0 5.68e-01 100.0% 78.6%
3251420 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 63.0 5.50e-01 100.0% 68.9%
3744353 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.70 48.0 5.02e-01 73.3% 83.6%
3557677 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 62.0 5.89e-01 100.0% 87.1%
3546727 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 62.0 5.09e-01 100.0% 61.1%
3550699 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.69 62.0 5.30e-01 100.0% 63.2%
3237640 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.68 57.0 4.55e-01 100.0% 48.2%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.68 61.0 5.70e-01 100.0% 81.3%
4218488 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 60.0 5.43e-01 100.0% 73.8%
3482680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 60.0 5.87e-01 100.0% 90.8%
3911248 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 60.0 5.24e-01 100.0% 90.0%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.67 59.0 5.45e-01 100.0% 76.0%
3566631 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 59.0 5.39e-01 100.0% 73.8%
3743464 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 60.0 5.55e-01 100.0% 81.3%
3207081 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 59.0 5.76e-01 98.3% 93.8%
2410381 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 60.0 5.45e-01 100.0% 78.5%
3999507 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 60.0 5.67e-01 100.0% 87.1%
3475429 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 59.0 5.61e-01 100.0% 92.9%
3514345 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 58.0 5.71e-01 100.0% 95.4%
3242138 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.65 48.0 4.87e-01 80.0% 83.3%
3995290 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.65 56.0 4.68e-01 100.0% 76.4%
3938415 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 58.0 5.68e-01 100.0% 93.8%
3884131 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 58.0 4.61e-01 100.0% 51.3%
3216019 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 57.0 5.63e-01 100.0% 95.4%
4377781 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 54.0 5.03e-01 100.0% 77.5%
3187166 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.63 53.0 4.79e-01 96.7% 70.6%
3631731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 55.0 4.15e-01 100.0% 54.7%
3572649 4.1.1.230 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7030 0.63 56.0 5.09e-01 100.0% 95.0%
3448327 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.63 58.0 5.48e-01 100.0% 87.1%
4015016 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 52.0 4.93e-01 96.7% 80.0%
3937776 4.1.1.308 ↗ beta barrels › SH3 › SH3 › SH3 › PF31073 0.62 56.0 5.27e-01 100.0% 86.3%
3208838 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.61 54.0 4.01e-01 100.0% 52.9%
3955562 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.61 51.0 4.38e-01 100.0% 74.3%
4667326 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.59 49.0 4.11e-01 100.0% 73.9%
2095479 1170.1.2.3 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Phage_glycop_gL 0.57 43.0 3.67e-01 85.0% 53.7%
160765 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 46.0 4.39e-01 100.0% 84.4%
3773104 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 44.0 3.59e-01 100.0% 61.5%
3631165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 46.0 4.18e-01 100.0% 70.6%
5052769 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 38.0 3.33e-01 83.3% 74.5%
3861713 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.51 43.0 3.28e-01 100.0% 77.4%