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NC_041950.1__YP_009603299.1__FDH67_gp25__00025

Bact-Vir

NC_041950.1__YP_009603299.1__FDH67_gp25__00025

Identity

Accession:
NC_041950 ↗
Kingdom:
phage

Quality

77.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demosthenesvirus› Gordonia_phage_Katyusha

TaxID: 1821555

Cluster

View cluster (26 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 50-168
PDB
Domain cluster: rep: KX268652.1__ANT40731.1__TRS1_19__00018__D16-136
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2y8tA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.55 22.0 3.00e-01 90.8% 70.9%
5ib0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 30.0 2.92e-01 100.0% 47.4%
2bm0A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.52 20.0 3.00e-01 97.5% 80.4%
1yfbA00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.50 22.0 3.01e-01 92.4% 86.5%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5039151 3103.1.1.0 ↗ alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN 0.77 62.0 6.67e-01 95.0% 100.0%
4856500 135.1.1.1 ↗ alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › G-alpha 0.60 16.0 2.93e-01 70.6% 73.5%
5083609 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 30.0 3.09e-01 89.9% 47.5%
4940950 101.1.2.143 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.56 26.0 3.16e-01 89.9% 65.0%
5032312 101.1.2.271 ↗ alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.55 24.0 2.53e-01 87.4% 39.1%
3168582 3771.1.1.1 ↗ a+b two layers › Central kinetochore subunit CHL4 C-terminal domain › Central kinetochore subunit CHL4 C-terminal domain › Central kinetochore subunit CHL4 C-terminal domain › CENP-N 0.54 26.0 3.21e-01 98.3% 72.9%
4120507 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.53 30.0 3.27e-01 95.8% 66.3%
5075002 101.1.2.525 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7646 0.53 24.0 2.68e-01 89.9% 50.5%
5010592 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.52 26.0 2.62e-01 94.1% 45.0%
5030187 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.52 33.0 3.91e-01 91.6% 97.4%