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NC_041950.1__YP_009603335.1__FDH67_gp61__00061

Bact-Vir

Identity

Accession:: NC_041950 ↗
Kingdom:: phage

Quality

86.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demosthenesvirus› Gordonia_phage_Katyusha

TaxID: 1821555

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-93

PDB

Domain cluster: representative

CATH (19)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4m0mA04	1.20.1270.440	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.68	48.0	4.20e-01	74.0%	83.8%
2ekjA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.59	42.0	3.76e-01	100.0%	54.3%
2i3fA00	1.10.3520.10	Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein	0.58	48.0	3.56e-01	92.2%	88.8%
3l5iA02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.57	43.0	4.07e-01	100.0%	68.2%
7y8sB03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.57	40.0	3.90e-01	100.0%	66.7%
2ed8A01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.57	39.0	3.79e-01	100.0%	64.0%
2e3vA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.56	41.0	3.72e-01	100.0%	58.3%
1wfnA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.55	39.0	3.79e-01	100.0%	64.8%
1uenA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.54	42.0	3.60e-01	100.0%	52.0%
2ibgA02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.53	38.0	3.51e-01	100.0%	56.9%
2rkqA00	3.40.80.10	Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like	0.53	41.0	3.26e-01	85.7%	95.3%
2vtfA03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.53	37.0	3.55e-01	100.0%	62.6%
4kh9A03	2.60.120.1370	Mainly Beta › Sandwich › Jelly Rolls ›	0.52	40.0	3.67e-01	88.3%	83.2%
4n68A00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	37.0	3.46e-01	100.0%	58.6%
2xz4A00	3.40.80.10	Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like	0.52	44.0	3.45e-01	93.5%	77.0%
3qjlA01	3.30.70.1890	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	42.0	3.64e-01	89.6%	97.5%
2kxtA01	2.60.60.30	Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains	0.51	44.0	3.53e-01	100.0%	73.2%
2eaxA00	3.40.80.10	Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like	0.51	43.0	3.43e-01	93.5%	78.0%
7vqxR01	4.10.1240.10	Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain	0.50	37.0	3.60e-01	76.6%	96.4%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
None	—		0.57	44.0	2.78e-01	81.8%	56.8%
4011483	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.57	46.0	4.07e-01	89.6%	87.0%
4944750	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.55	49.0	4.01e-01	100.0%	70.7%
5052919	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.53	45.0	3.64e-01	94.8%	89.3%
4944880	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.52	45.0	3.93e-01	97.4%	75.0%
4608145	284.1.1.8 ↗	a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_3	0.50	41.0	3.67e-01	89.6%	99.1%