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NC_041951.1__YP_009603449.1__FDH68_gp76__00076

Bact-Vir

NC_041951.1__YP_009603449.1__FDH68_gp76__00076

Identity

Accession:
NC_041951 ↗
Kingdom:
phage

Quality

87.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gordonvirus› Arthrobacter_phage_CapnMurica

TaxID: 1772294

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-59
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3prbA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.72 49.0 5.52e-01 91.4% 93.2%
4nfwF00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.71 62.0 4.60e-01 100.0% 52.9%
2pp6A02 2.40.10.210 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) 0.69 57.0 5.53e-01 98.3% 81.0%
4p02B02 3.30.379.20 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › 0.69 36.0 2.79e-01 100.0% 23.8%
3aiiA02 2.40.240.100 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › 0.69 54.0 5.29e-01 98.3% 78.1%
4hpqB00 2.60.270.60 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Autophagy-related protein 31 0.66 58.0 4.67e-01 100.0% 67.0%
1sjyA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.66 57.0 4.24e-01 100.0% 53.9%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.66 47.0 4.79e-01 98.3% 78.6%
1x0gA00 2.60.300.12 Mainly Beta › Sandwich › Hypothetical Protein Aq_1857; Chain: A; › HesB-like domain 0.65 45.0 3.81e-01 100.0% 42.2%
1dfuP00 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.65 55.0 4.82e-01 100.0% 74.5%
4mpoB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.64 54.0 4.15e-01 100.0% 62.2%
2ylmA03 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 54.0 4.63e-01 100.0% 87.6%
1x1mA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 53.0 4.43e-01 100.0% 78.5%
4m01A02 3.10.20.320 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Putative peptidoglycan bound protein (lpxtg motif) 0.61 53.0 4.86e-01 100.0% 97.4%
4bfrB02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 53.0 4.15e-01 100.0% 62.5%
6u8yK01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.60 46.0 3.45e-01 84.5% 32.5%
5ffiE00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.60 53.0 4.42e-01 100.0% 99.0%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 50.0 4.35e-01 100.0% 96.9%
6kykA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 51.0 4.61e-01 100.0% 97.6%
2dnfA01 3.10.20.230 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Doublecortin domain 0.59 50.0 4.46e-01 100.0% 79.8%
1t0yA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 52.0 4.50e-01 100.0% 85.6%
7uvpA03 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.58 50.0 3.78e-01 98.3% 49.0%
5uayA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.58 50.0 4.53e-01 100.0% 96.4%
1v6eA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 48.0 4.43e-01 100.0% 96.2%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 47.0 4.17e-01 100.0% 96.9%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 43.0 2.82e-01 81.0% 18.8%
4ge6A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 42.0 2.70e-01 81.0% 17.8%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 41.0 2.70e-01 81.0% 19.4%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.55 48.0 4.38e-01 100.0% 78.5%
1eu3A02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 39.0 3.51e-01 100.0% 55.0%
2kvzA00 3.10.20.320 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Putative peptidoglycan bound protein (lpxtg motif) 0.54 47.0 4.16e-01 100.0% 71.8%
4ad9A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 39.0 2.77e-01 81.0% 69.6%
3l48A01 2.60.40.2070 Mainly Beta › Sandwich › Immunoglobulin-like › PapC, C-terminal domain 0.53 42.0 3.98e-01 96.6% 97.4%
2bcqA03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 36.0 2.93e-01 74.1% 92.7%
3gtyX02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.51 36.0 3.26e-01 77.6% 85.7%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3802388 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.76 68.0 6.03e-01 100.0% 74.7%
5042815 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.76 70.0 6.24e-01 100.0% 82.5%
5022325 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.75 67.0 5.57e-01 100.0% 70.0%
5041151 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.74 67.0 6.28e-01 100.0% 94.3%
4967823 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.72 65.0 5.96e-01 100.0% 92.0%
5041150 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.71 64.0 6.02e-01 100.0% 92.9%
4950806 4.6.1.8 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › WH_Lhr 0.71 54.0 5.57e-01 100.0% 89.1%
3747587 239.3.1.0 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.71 63.0 4.97e-01 100.0% 68.3%
5058482 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.70 62.0 4.69e-01 100.0% 62.1%
4169889 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.70 63.0 5.91e-01 100.0% 91.4%
4951496 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.68 59.0 5.29e-01 100.0% 84.7%
4956032 239.1.1.7 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.68 52.0 5.23e-01 100.0% 83.3%
4031786 1.1.13.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.65 57.0 5.08e-01 100.0% 82.4%
3220105 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.65 50.0 3.14e-01 84.5% 20.0%
4395103 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 51.0 4.41e-01 100.0% 61.1%
3384326 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 51.0 4.67e-01 100.0% 80.0%
167222 391.1.1.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.59 37.0 3.71e-01 98.3% 60.7%
3738244 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.57 44.0 2.84e-01 86.2% 19.7%
4029261 321.1.1.4 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N 0.56 42.0 2.73e-01 86.2% 45.8%
3224225 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.55 47.0 4.24e-01 100.0% 85.9%
3587079 3114.1.1.1 ↗ beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain › MucBP 0.55 48.0 4.65e-01 100.0% 98.5%
4027120 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.54 47.0 3.62e-01 98.3% 47.7%
3910972 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.53 28.0 2.85e-01 87.9% 51.7%
4242804 225.2.1.1 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 0.52 43.0 3.18e-01 100.0% 55.1%
4977114 2011.2.1.7 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.52 40.0 2.72e-01 87.9% 26.8%
3375447 274.1.1.46 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › CcmF_C 0.50 37.0 3.21e-01 86.2% 94.3%