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NC_041958.1__YP_009603876.1__FDH82_gp69__00069
Bact-VirNC_041958.1__YP_009603876.1__FDH82_gp69__00069
Identity
- Accession:
- NC_041958 ↗
- Kingdom:
- phage
Quality
56.0
mean pLDDT
Taxonomy
TaxID: 1682380
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 728-777
D2
medium
residues 54-130
Domain cluster:
rep: IMGVR_UViG_3300028546_000001-3300028546-Ga0307748_124924__D4-78
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10145.15 best | PhageMin_Tail | 34.7 | 2.50e-08 | 59.7% | 22.9% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ahoB02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.73 | 51.0 | 4.80e-01 | 71.4% | 72.5% |
| 4ae4A00 | 1.20.120.1920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UBAP1 SOUBA domain | 0.72 | 52.0 | 4.58e-01 | 93.5% | 51.8% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 49.0 | 5.46e-01 | 75.3% | 100.0% |
| 2mqaA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.66 | 52.0 | 4.49e-01 | 87.0% | 100.0% |
| 2x1dA02 | 1.10.10.2120 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.65 | 44.0 | 4.50e-01 | 70.1% | 100.0% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.64 | 44.0 | 4.99e-01 | 75.3% | 100.0% |
| 3d8lA00 | 1.10.8.940 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 | 0.64 | 39.0 | 3.72e-01 | 72.7% | 50.5% |
| 4lzjA02 | 1.10.8.1080 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.61 | 44.0 | 4.38e-01 | 94.8% | 75.9% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 52.0 | 4.40e-01 | 97.4% | 83.3% |
| 2px0A01 | 1.20.120.1380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar FlhF biosynthesis protein, N domain | 0.60 | 46.0 | 4.74e-01 | 81.8% | 89.0% |
| 1dcnA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.60 | 43.0 | 4.41e-01 | 75.3% | 80.6% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.60 | 49.0 | 4.58e-01 | 90.9% | 89.7% |
| 1k04A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.59 | 43.0 | 3.99e-01 | 79.2% | 87.5% |
| 2ivxB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 49.0 | 4.14e-01 | 97.4% | 77.1% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 50.0 | 4.65e-01 | 96.1% | 94.8% |
| 5t3wA00 | 1.20.120.1160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.57 | 41.0 | 3.40e-01 | 85.7% | 42.3% |
| 5xe7A01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.57 | 48.0 | 3.99e-01 | 94.8% | 88.0% |
| 3wvoC02 | 1.10.132.100 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.57 | 41.0 | 3.56e-01 | 77.9% | 67.7% |
| 7ml0M01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 44.0 | 4.36e-01 | 85.7% | 97.6% |
| 2hpsA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 46.0 | 3.52e-01 | 94.8% | 74.5% |
| 4etrB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 35.0 | 3.09e-01 | 70.1% | 89.3% |
| 3pqaB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.52 | 42.0 | 2.95e-01 | 93.5% | 32.4% |
| 1yuzB01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 38.0 | 3.13e-01 | 79.2% | 53.6% |
| 1jr8A00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.51 | 40.0 | 3.65e-01 | 100.0% | 64.8% |
| 8ek4A01 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.50 | 37.0 | 3.13e-01 | 79.2% | 87.2% |
| 1fewA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 38.0 | 2.91e-01 | 80.5% | 72.3% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032310 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.97 | 92.0 | 7.06e-01 | 98.7% | 50.7% |
| 3941716 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.90 | 78.0 | 6.36e-01 | 90.9% | 57.7% |
| 3029394 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.72 | 48.0 | 5.58e-01 | 71.4% | 98.1% |
| 4014546 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.72 | 63.0 | 6.00e-01 | 97.4% | 94.4% |
| 3724301 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.70 | 62.0 | 5.72e-01 | 98.7% | 86.0% |
| 4016526 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.69 | 56.0 | 5.88e-01 | 96.1% | 100.0% |
| 5070580 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.68 | 49.0 | 5.48e-01 | 79.2% | 100.0% |
| 4614019 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.64 | 50.0 | 3.40e-01 | 84.4% | 51.6% |
| 3391293 | 101.1.10.13 ↗ | alpha arrays › HTH › HTH › Cyclin-like › DUF3452 | 0.63 | 54.0 | 4.69e-01 | 97.4% | 95.8% |
| 3389870 | 101.1.10.13 ↗ | alpha arrays › HTH › HTH › Cyclin-like › DUF3452 | 0.63 | 56.0 | 4.68e-01 | 98.7% | 79.2% |
| 5080632 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.62 | 52.0 | 4.74e-01 | 93.5% | 72.4% |
| 5073389 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.60 | 53.0 | 4.42e-01 | 100.0% | 72.9% |
| 3726125 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.59 | 49.0 | 4.73e-01 | 98.7% | 83.3% |
| 4269573 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 48.0 | 4.53e-01 | 93.5% | 82.1% |
| 3742639 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.58 | 49.0 | 4.01e-01 | 94.8% | 78.7% |
| 3604922 | 1189.1.1.3 ↗ | alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › GARP | 0.57 | 41.0 | 3.01e-01 | 75.3% | 81.9% |
| 4965872 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.55 | 45.0 | 4.20e-01 | 93.5% | 83.0% |
| 5076914 | 563.2.1.0 ↗ | alpha bundles › ATPD N-terminal domain-like › Cas Cmr5-like › Cas Cmr5-like | 0.54 | 46.0 | 4.04e-01 | 97.4% | 70.0% |
| 4213065 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.53 | 39.0 | 3.17e-01 | 79.2% | 56.9% |
| 3192660 | 509.1.1.9 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH_ZNF598 | 0.53 | 47.0 | 4.42e-01 | 100.0% | 92.6% |
| 3411249 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.52 | 38.0 | 3.24e-01 | 77.9% | 73.1% |
| 4011370 | 509.1.1.0 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain | 0.52 | 45.0 | 4.27e-01 | 100.0% | 92.6% |
| 4247116 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.51 | 33.0 | 2.86e-01 | 90.9% | 45.5% |
D3
medium
residues 131-318
Domain cluster:
rep: NC_048166.1__YP_009820345.1__HOV23_gp014__00014__D490-699
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10145.15 best | PhageMin_Tail | 101.2 | 1.00e-28 | 78.7% | 67.7% |
D4
medium
residues 448-639
D5
medium
residues 640-727
D6
medium
residues 821-909