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NC_041961.1__YP_009604112.1__FDH86_gp087__00087

Bact-Vir

NC_041961.1__YP_009604112.1__FDH86_gp087__00087

Identity

Accession:
NC_041961 ↗
Kingdom:
phage

Quality

67.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Tankvirus› Arthrobacter_phage_Tank

TaxID: 1772319

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-80
PDB
Domain cluster: rep: OM818331.1__UOK18411.1__SEA_BRUHMOMENT_95__00095__D2-80
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.71 51.0 3.90e-01 77.2% 33.3%
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.69 52.0 4.98e-01 78.5% 74.2%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.68 52.0 3.62e-01 82.3% 98.1%
2xe4A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.67 56.0 3.63e-01 91.1% 82.1%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.66 54.0 3.58e-01 89.9% 57.1%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.65 56.0 3.74e-01 93.7% 89.2%
2q7eA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.63 46.0 3.39e-01 77.2% 34.4%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.62 46.0 4.34e-01 81.0% 74.7%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 55.0 3.40e-01 100.0% 35.6%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 55.0 3.41e-01 100.0% 33.8%
2qiyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 43.0 3.72e-01 77.2% 95.5%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 52.0 4.69e-01 100.0% 90.4%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 44.0 3.61e-01 77.2% 43.4%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.60 53.0 3.52e-01 100.0% 31.1%
2mm0A00 2.10.70.110 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.60 38.0 4.13e-01 79.7% 79.7%
3e5dA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 41.0 3.56e-01 72.2% 49.6%
7c38B01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.60 52.0 3.52e-01 100.0% 29.7%
2xp1A02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 42.0 4.25e-01 94.9% 73.8%
7ob9B01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.59 45.0 3.40e-01 97.5% 33.9%
1nrvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 44.0 4.08e-01 96.2% 63.0%
7uhyA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 52.0 3.48e-01 100.0% 30.6%
2hqsA01 3.40.50.10070 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TolB, N-terminal domain 0.58 48.0 4.06e-01 96.2% 79.6%
6upsA01 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.58 42.0 3.43e-01 78.5% 89.0%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 38.0 4.39e-01 88.6% 96.4%
4xrtA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 41.0 3.42e-01 75.9% 48.6%
3h3hB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 44.0 3.94e-01 86.1% 95.8%
3rriA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 39.0 3.35e-01 73.4% 45.0%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 50.0 3.84e-01 100.0% 78.9%
2l3tA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 45.0 4.13e-01 94.9% 68.0%
1uurA04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 38.0 3.25e-01 91.1% 43.6%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 47.0 3.27e-01 100.0% 32.9%
2gk4A00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.54 39.0 2.86e-01 77.2% 86.0%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 42.0 3.86e-01 94.9% 64.4%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 44.0 4.07e-01 96.2% 70.0%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 40.0 3.88e-01 93.7% 73.3%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4991490 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.72 52.0 5.65e-01 81.0% 93.8%
5055905 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.71 52.0 4.61e-01 82.3% 53.0%
1107861 3513.1.1.1 ↗ a+b two layers › Putative lipoprotein LppA › Putative lipoprotein LppA › Putative lipoprotein LppA › DUF4853 0.71 51.0 3.90e-01 77.2% 33.3%
5039633 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.70 53.0 5.44e-01 82.3% 85.1%
3826773 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.70 62.0 6.01e-01 97.5% 86.5%
3998600 5.1.2.46 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Beta-prop_IFT140_1st 0.69 46.0 3.77e-01 72.2% 37.5%
5018171 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.69 51.0 5.21e-01 78.5% 88.0%
4357660 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 56.0 3.60e-01 89.9% 57.1%
5053933 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.67 49.0 5.34e-01 79.7% 93.8%
3236101 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.67 48.0 4.50e-01 75.9% 62.0%
4440158 5.1.3.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Fungal_lectin 0.66 57.0 3.72e-01 94.9% 79.1%
4367085 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 49.0 4.82e-01 79.7% 85.9%
3815957 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.65 58.0 3.86e-01 100.0% 32.5%
4147907 9.1.1.14 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.65 48.0 3.92e-01 77.2% 55.0%
4529966 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 54.0 3.57e-01 93.7% 94.6%
5043126 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 47.0 5.04e-01 79.7% 98.5%
3935989 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 57.0 3.66e-01 100.0% 24.4%
3621570 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.63 56.0 3.58e-01 98.7% 93.5%
4017127 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 54.0 3.75e-01 100.0% 31.1%
4964966 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.61 48.0 3.92e-01 86.1% 78.1%
3202006 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 55.0 3.47e-01 100.0% 23.5%
4142345 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.61 55.0 3.56e-01 100.0% 34.4%
3440495 292.1.1.1 ↗ a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.61 44.0 3.23e-01 78.5% 51.1%
3193823 7502.1.1.2 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.61 55.0 3.82e-01 100.0% 86.9%
3939496 5.1.4.500 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sec39 0.60 54.0 3.12e-01 100.0% 11.8%
4020163 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.60 45.0 3.63e-01 79.7% 42.7%
3197766 5.1.4.119 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rav1p_C 0.59 53.0 3.03e-01 100.0% 12.9%
1164309 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.59 42.0 4.10e-01 94.9% 67.0%
3741358 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 54.0 3.79e-01 100.0% 36.2%
1117792 316.1.1.10 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap 0.58 46.0 3.20e-01 86.1% 51.3%
3599747 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.58 50.0 3.34e-01 100.0% 23.3%
3638019 5.1.5.88 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nucleoporin_N 0.58 50.0 3.09e-01 100.0% 20.4%
3475465 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.58 51.0 3.53e-01 100.0% 33.2%
3784539 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.57 45.0 4.03e-01 94.9% 60.9%
5024242 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.57 44.0 3.61e-01 86.1% 74.2%
5018044 5.1.3.20 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 0.57 48.0 3.18e-01 94.9% 51.8%
3214741 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 46.0 4.44e-01 91.1% 100.0%
3677315 2003.1.6.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like 0.56 36.0 2.67e-01 100.0% 25.5%
4050317 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 43.0 3.73e-01 97.5% 53.6%
3936785 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.55 40.0 3.73e-01 78.5% 60.0%
3594261 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.55 47.0 3.41e-01 98.7% 66.5%
1511313 214.1.1.3 ↗ a+b two layers › SH2 › SH2 › SH2 › Cbl_N3 0.54 40.0 3.83e-01 93.7% 67.8%
3211396 5.1.4.167 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR19_1st 0.54 48.0 3.13e-01 100.0% 24.6%
3400905 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.54 40.0 2.88e-01 78.5% 92.6%
5062110 2003.1.1.51 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.53 39.0 3.04e-01 79.7% 80.9%
3639845 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.53 47.0 4.14e-01 96.2% 76.4%
3637634 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 44.0 3.52e-01 96.2% 91.2%
3595478 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.52 44.0 3.20e-01 100.0% 88.1%
3394309 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.51 41.0 3.42e-01 98.7% 82.6%
3782542 6109.1.1.1 ↗ a+b two layers › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › ChAPs 0.51 45.0 3.38e-01 97.5% 52.1%