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NC_041961.1__YP_009604119.1__FDH86_gp094__00094
Bact-VirNC_041961.1__YP_009604119.1__FDH86_gp094__00094
Identity
- Accession:
- NC_041961 ↗
- Kingdom:
- phage
Quality
82.1
mean pLDDT
Taxonomy
TaxID: 1772319
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-97
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2f5kA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 44.0 | 5.46e-01 | 72.1% | 100.0% |
| 3fb9B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 48.0 | 4.91e-01 | 74.4% | 70.2% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.71 | 48.0 | 5.11e-01 | 77.9% | 80.0% |
| 4kbmB01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.69 | 41.0 | 4.85e-01 | 70.9% | 92.7% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 46.0 | 5.03e-01 | 75.6% | 83.3% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 41.0 | 4.57e-01 | 74.4% | 78.5% |
| 3c4sA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 40.0 | 4.80e-01 | 91.9% | 91.2% |
| 2qggA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.65 | 40.0 | 3.93e-01 | 77.9% | 57.0% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 41.0 | 4.53e-01 | 74.4% | 79.7% |
| 1whmA01 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.64 | 45.0 | 4.84e-01 | 73.3% | 100.0% |
| 2lqkA00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.63 | 43.0 | 4.64e-01 | 100.0% | 87.1% |
| 3wndA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.62 | 43.0 | 4.17e-01 | 76.7% | 64.9% |
| 1q67A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 44.0 | 3.79e-01 | 75.6% | 76.4% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 42.0 | 3.73e-01 | 73.3% | 93.9% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 40.0 | 4.23e-01 | 73.3% | 77.3% |
| 2f1lA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.58 | 36.0 | 3.59e-01 | 76.7% | 59.6% |
| 2cofA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 42.0 | 3.96e-01 | 76.7% | 70.1% |
| 3p26A03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 42.0 | 3.89e-01 | 76.7% | 69.1% |
| 5l37C00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.57 | 43.0 | 4.37e-01 | 81.4% | 100.0% |
| 1njhA00 | 2.70.180.10 | Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF | 0.56 | 42.0 | 3.94e-01 | 81.4% | 83.3% |
| 2rcfA00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.55 | 44.0 | 4.52e-01 | 87.2% | 100.0% |
| 2gumB01 | 2.30.30.1230 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 37.0 | 3.56e-01 | 72.1% | 79.0% |
| 3mcaA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 39.0 | 3.66e-01 | 76.7% | 64.7% |
| 3n6rA03 | 3.30.700.30 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › | 0.52 | 39.0 | 3.44e-01 | 81.4% | 66.9% |
| 6epkA02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.51 | 33.0 | 3.53e-01 | 77.9% | 80.3% |
| 4f0qA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.50 | 35.0 | 2.75e-01 | 72.1% | 52.1% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.50 | 35.0 | 3.35e-01 | 73.3% | 86.8% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3570399 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 48.0 | 5.41e-01 | 73.3% | 81.5% |
| 3220929 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 50.0 | 5.33e-01 | 74.4% | 74.7% |
| 3941004 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 50.0 | 5.19e-01 | 81.4% | 71.2% |
| 4851967 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.75 | 48.0 | 5.57e-01 | 75.6% | 91.9% |
| 3492757 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 46.0 | 5.04e-01 | 73.3% | 77.1% |
| 3913782 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 48.0 | 5.46e-01 | 76.7% | 92.2% |
| 5040416 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 38.0 | 4.77e-01 | 73.3% | 88.0% |
| 1112010 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.71 | 48.0 | 5.11e-01 | 77.9% | 80.0% |
| 3636050 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.70 | 46.0 | 4.12e-01 | 80.2% | 50.4% |
| 3587906 | 4.1.1.46 ↗ | beta barrels › SH3 › SH3 › SH3 › VEG | 0.69 | 48.0 | 5.01e-01 | 75.6% | 77.5% |
| 3938484 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 50.0 | 4.49e-01 | 91.9% | 55.0% |
| 3410370 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 47.0 | 5.15e-01 | 76.7% | 87.1% |
| 5060760 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.68 | 38.0 | 4.32e-01 | 74.4% | 72.3% |
| 4944212 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.68 | 43.0 | 4.29e-01 | 75.6% | 62.5% |
| 3256053 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.68 | 51.0 | 5.05e-01 | 86.0% | 75.6% |
| 3939982 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 49.0 | 4.53e-01 | 90.7% | 60.0% |
| 3627576 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 45.0 | 5.11e-01 | 72.1% | 92.3% |
| 4938919 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 44.0 | 4.86e-01 | 100.0% | 89.2% |
| 3730835 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.65 | 49.0 | 4.77e-01 | 86.0% | 71.6% |
| 5035742 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 41.0 | 4.70e-01 | 91.9% | 90.0% |
| 3661025 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.65 | 57.0 | 5.16e-01 | 95.3% | 91.3% |
| 3584555 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.65 | 46.0 | 5.01e-01 | 75.6% | 90.0% |
| 3728855 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 43.0 | 4.52e-01 | 74.4% | 77.3% |
| 3709896 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 49.0 | 5.00e-01 | 94.2% | 82.4% |
| 3912620 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.64 | 44.0 | 4.57e-01 | 70.9% | 93.8% |
| 4051652 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.64 | 39.0 | 3.83e-01 | 76.7% | 55.8% |
| 4954224 | 4.1.1.182 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2097 | 0.64 | 47.0 | 4.54e-01 | 77.9% | 73.7% |
| 3582834 | 4.1.1.319 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 | 0.63 | 44.0 | 4.30e-01 | 77.9% | 65.3% |
| 4018672 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.63 | 51.0 | 4.66e-01 | 89.5% | 74.8% |
| 3923766 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 45.0 | 4.10e-01 | 76.7% | 71.3% |
| 4449344 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.62 | 38.0 | 3.77e-01 | 76.7% | 58.9% |
| 5055336 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.62 | 40.0 | 3.96e-01 | 76.7% | 63.3% |
| 4936051 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 39.0 | 4.49e-01 | 74.4% | 100.0% |
| 3391463 | 4.18.1.1 ↗ | beta barrels › SH3 › Plus3 › Plus3 › Plus-3 | 0.60 | 51.0 | 4.50e-01 | 94.2% | 64.0% |
| 4682440 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.60 | 37.0 | 3.63e-01 | 76.7% | 55.8% |
| 5025079 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 35.0 | 4.10e-01 | 74.4% | 90.9% |
| 3386803 | 1.1.7.79 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND | 0.59 | 38.0 | 3.65e-01 | 74.4% | 56.0% |
| 4083333 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.59 | 37.0 | 3.60e-01 | 76.7% | 56.8% |
| 4142320 | 219.1.1.111 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 | 0.58 | 41.0 | 2.80e-01 | 74.4% | 64.6% |
| 3738161 | 4.18.1.1 ↗ | beta barrels › SH3 › Plus3 › Plus3 › Plus-3 | 0.58 | 49.0 | 4.37e-01 | 94.2% | 68.0% |
| 3378386 | 219.1.1.111 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 | 0.57 | 41.0 | 2.84e-01 | 75.6% | 72.5% |
| 25004 | 2.16.1.1 ↗ | beta barrels › OB-fold › EutN/CcmL-like › EutN/CcmL-like › EutN_CcmL | 0.57 | 43.0 | 4.45e-01 | 81.4% | 100.0% |
| 1563513 | 1.1.8.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Ski7_3rd | 0.56 | 42.0 | 3.87e-01 | 77.9% | 61.7% |
| 3994413 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 38.0 | 3.31e-01 | 70.9% | 82.1% |
| 3315492 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.56 | 39.0 | 3.40e-01 | 73.3% | 83.0% |
| 3627688 | 4.1.1.319 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 | 0.55 | 49.0 | 4.10e-01 | 100.0% | 68.0% |
| 3963855 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.54 | 47.0 | 3.52e-01 | 100.0% | 76.4% |
| 3594572 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 40.0 | 3.42e-01 | 88.4% | 45.8% |
| 3856429 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.53 | 37.0 | 3.28e-01 | 72.1% | 68.3% |
| 4173773 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.53 | 36.0 | 3.71e-01 | 73.3% | 72.6% |
| 3425577 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 38.0 | 3.48e-01 | 76.7% | 93.0% |
| 3274129 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 39.0 | 3.01e-01 | 81.4% | 45.7% |
| 4978306 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.52 | 37.0 | 3.15e-01 | 74.4% | 97.1% |
| 4514268 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.51 | 35.0 | 3.50e-01 | 73.3% | 68.5% |
| 3420098 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.51 | 38.0 | 2.87e-01 | 80.2% | 41.4% |
| None | — | 0.50 | 38.0 | 3.10e-01 | 81.4% | 54.1% | |
| 4950192 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.50 | 36.0 | 3.71e-01 | 77.9% | 90.6% |
| 3512466 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.50 | 38.0 | 3.39e-01 | 81.4% | 73.6% |