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NC_041962.1__YP_009604161.1__FDH87_gp094__00031

Bact-Vir

NC_041962.1__YP_009604161.1__FDH87_gp094__00031

Identity

Accession:
NC_041962 ↗
Kingdom:
phage

Quality

77.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Tinduovirus› Tsukamurella_phage_TIN4

TaxID: 1636547

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-162
PDB
Domain cluster: rep: LR990834.1__CAD7757509.1__ATHO_20__00020__D167-317
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01551.30 best Peptidase_M23 44.3 2.30e-11 84.3% 90.6%
D2 high residues 187-287
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.82 27.0 3.64e-01 78.2% 55.2%
6lo8F01 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.81 28.0 3.42e-01 95.0% 47.8%
4rgbA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 41.0 3.06e-01 70.3% 55.5%
3chxC00 1.20.1050.50 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Particulate methane monooxygenase subunit c2. Chain: C 0.60 43.0 3.72e-01 76.2% 84.3%
8i3jA01 1.20.920.20 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.57 48.0 3.67e-01 94.1% 52.2%
5cmyA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 38.0 3.38e-01 70.3% 52.1%
1v9dB00 1.20.58.2220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain 0.54 42.0 2.99e-01 84.2% 62.9%
2kz5A00 1.10.880.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor Skn-1; Chain P › Transcription factor, Skn-1-like, DNA-binding domain 0.54 31.0 3.28e-01 70.3% 61.5%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.54 38.0 3.00e-01 73.3% 76.9%
7ekdA01 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.53 37.0 2.61e-01 72.3% 83.3%
3tahA02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 28.0 2.97e-01 77.2% 56.8%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3419760 150.7.1.3 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE › CGLD27-like 0.68 31.0 3.34e-01 94.1% 50.6%
5062212 187.1.1.1 ↗ alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin › Fer4_8 0.61 46.0 4.50e-01 80.2% 77.9%
3273218 633.24.1.2 ↗ alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 0.61 30.0 3.13e-01 71.3% 50.5%
5033900 187.1.1.4 ↗ alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin › Fer4_17 0.60 45.0 4.41e-01 80.2% 78.2%
4950124 187.1.1.0 ↗ alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin 0.56 42.0 4.24e-01 80.2% 80.0%
4950634 187.1.1.2 ↗ alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin › Fer4_9 0.56 42.0 4.38e-01 79.2% 90.0%
3368824 5054.1.1.17 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TRAM_LAG1_CLN8 0.56 41.0 3.17e-01 77.2% 80.9%
3385758 514.1.1.1 ↗ alpha bundles › YutG-like › YutG-like › YutG-like › PgpA 0.53 39.0 3.43e-01 77.2% 66.7%