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NC_041963.1__YP_009604252.1__FDH88_gp13__00013
Bact-VirNC_041963.1__YP_009604252.1__FDH88_gp13__00013
Identity
- Accession:
- NC_041963 ↗
- Kingdom:
- phage
Quality
86.1
mean pLDDT
Taxonomy
TaxID: 1662331
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-85
Domain cluster:
rep: LR743530.1__CAA2409743.1__X__00007__D3-67
D2
high
residues 90-181
Domain cluster:
rep: LSDeep1_scaffold_42_prodigal-single.1__X__X__00143__D1405-1528
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3oreA01 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.65 | 43.0 | 4.98e-01 | 93.5% | 93.9% |
| 2kt2A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 44.0 | 4.98e-01 | 100.0% | 95.7% |
| 4kr6A01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.63 | 43.0 | 3.51e-01 | 100.0% | 38.0% |
| 3cjsA00 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.59 | 32.0 | 3.83e-01 | 100.0% | 81.0% |
| 4liqE01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 35.0 | 3.73e-01 | 100.0% | 67.9% |
| 4i68A00 | 3.30.70.1800 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 35.0 | 3.53e-01 | 100.0% | 60.0% |
| 1mwyA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 38.0 | 4.11e-01 | 100.0% | 84.9% |
| 2k1mA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 38.0 | 3.78e-01 | 100.0% | 65.3% |
| 5jdjA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 38.0 | 3.86e-01 | 100.0% | 68.1% |
| 2eo1A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 38.0 | 3.69e-01 | 100.0% | 60.8% |
| 2rikA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 39.0 | 3.86e-01 | 100.0% | 68.8% |
| 3o66B01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 38.0 | 3.12e-01 | 81.5% | 38.1% |
| 2a38A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 39.0 | 3.88e-01 | 100.0% | 69.8% |
| 2y23A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 38.0 | 3.70e-01 | 100.0% | 63.5% |
| 7ahsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 37.0 | 3.81e-01 | 100.0% | 73.8% |
| 5uv6A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 39.0 | 4.04e-01 | 100.0% | 77.5% |
| 2wp3O00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 38.0 | 3.77e-01 | 100.0% | 68.0% |
| 5tzmA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 37.0 | 3.79e-01 | 100.0% | 72.2% |
| 1whyA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 38.0 | 4.21e-01 | 100.0% | 95.8% |
| 1waaC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 36.0 | 3.64e-01 | 100.0% | 66.7% |
| 2l04A00 | 2.60.40.1080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 36.0 | 3.63e-01 | 100.0% | 68.1% |
| 1gx5A03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.54 | 43.0 | 3.95e-01 | 100.0% | 66.4% |
| 7ahsA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 37.0 | 3.80e-01 | 100.0% | 75.0% |
| 2v1nA01 | 1.10.10.2030 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain | 0.53 | 37.0 | 3.65e-01 | 89.1% | 67.3% |
| 4fa8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 44.0 | 4.24e-01 | 100.0% | 82.7% |
| 2l01A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 30.0 | 3.25e-01 | 81.5% | 66.2% |
| 2dltA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 35.0 | 3.41e-01 | 100.0% | 60.4% |
| 2hi4A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.52 | 41.0 | 2.69e-01 | 88.0% | 63.7% |
| 3f6oB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 28.0 | 2.84e-01 | 79.3% | 50.5% |
| 4uhiA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.52 | 37.0 | 2.47e-01 | 77.2% | 69.6% |
| 6uvuA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 30.0 | 2.91e-01 | 87.0% | 51.0% |
| 1ra6A02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.51 | 40.0 | 3.86e-01 | 100.0% | 74.5% |
| 1dd5A02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.50 | 38.0 | 4.16e-01 | 83.7% | 100.0% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3166067 | 3019.1.1.7 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Phage_sheath_domII | 0.78 | 73.0 | 6.96e-01 | 100.0% | 92.4% |
| 4258504 | 310.1.1.2 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N | 0.77 | 46.0 | 4.62e-01 | 87.0% | 58.9% |
| 3266992 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.72 | 33.0 | 3.88e-01 | 77.2% | 60.0% |
| 5039729 | 310.1.1.2 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N | 0.69 | 42.0 | 4.05e-01 | 85.9% | 53.3% |
| 4965997 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.68 | 48.0 | 4.88e-01 | 91.3% | 74.4% |
| 5057765 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.67 | 43.0 | 4.55e-01 | 93.5% | 75.0% |
| 3894383 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.65 | 38.0 | 4.72e-01 | 91.3% | 96.4% |
| 4519566 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.64 | 43.0 | 4.56e-01 | 93.5% | 78.8% |
| 5077049 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.62 | 42.0 | 4.54e-01 | 100.0% | 84.0% |
| 4174479 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.61 | 33.0 | 3.07e-01 | 93.5% | 41.7% |
| 3587558 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 35.0 | 3.96e-01 | 88.0% | 75.7% |
| 5043257 | 304.24.1.5 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N | 0.60 | 34.0 | 3.90e-01 | 100.0% | 78.5% |
| 3916504 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.58 | 52.0 | 3.76e-01 | 100.0% | 47.5% |
| 5062701 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.57 | 46.0 | 4.46e-01 | 100.0% | 76.2% |
| 3501408 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 35.0 | 3.75e-01 | 89.1% | 71.2% |
| 4030543 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.57 | 40.0 | 3.28e-01 | 73.9% | 41.1% |
| 2755463 | 316.1.1.34 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DncV-like_NTFase | 0.56 | 43.0 | 3.58e-01 | 81.5% | 77.6% |
| 4419939 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.56 | 35.0 | 3.72e-01 | 91.3% | 71.2% |
| 4558826 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.54 | 42.0 | 4.43e-01 | 97.8% | 95.0% |
| 3609850 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.54 | 39.0 | 3.07e-01 | 87.0% | 34.6% |
| 4939103 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.54 | 29.0 | 3.18e-01 | 81.5% | 64.0% |
| 3669878 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 29.0 | 3.01e-01 | 78.3% | 52.2% |
| 5028109 | 318.1.1.0 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 | 0.53 | 40.0 | 4.38e-01 | 97.8% | 100.0% |
| 3603379 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 30.0 | 3.21e-01 | 79.3% | 62.5% |
| 4956853 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 28.0 | 2.92e-01 | 84.8% | 54.1% |
| 4950695 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.52 | 39.0 | 4.25e-01 | 80.4% | 100.0% |
| 5074997 | 328.7.1.0 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain | 0.52 | 39.0 | 4.25e-01 | 83.7% | 98.7% |
| 4204492 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 27.0 | 3.05e-01 | 84.8% | 64.3% |
| 4951679 | 101.1.2.89 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR | 0.52 | 28.0 | 3.05e-01 | 89.1% | 60.0% |
| 4993543 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 31.0 | 3.22e-01 | 87.0% | 64.7% |
| 5038823 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.51 | 33.0 | 3.61e-01 | 93.5% | 82.7% |
| 3464857 | 3012.1.1.1 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase | 0.50 | 38.0 | 3.81e-01 | 80.4% | 80.0% |
| 4979496 | 328.9.1.0 ↗ | a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain | 0.50 | 34.0 | 3.90e-01 | 76.1% | 100.0% |
| 5063572 | 328.3.1.0 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain | 0.50 | 36.0 | 3.99e-01 | 79.3% | 100.0% |
| 4460746 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.50 | 39.0 | 3.16e-01 | 83.7% | 43.9% |