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NC_041963.1__YP_009604256.1__FDH88_gp17__00017
Bact-VirNC_041963.1__YP_009604256.1__FDH88_gp17__00017
Identity
- Accession:
- NC_041963 ↗
- Kingdom:
- phage
Quality
93.8
mean pLDDT
Taxonomy
TaxID: 1662331
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 54-147
Domain cluster:
rep: LSDeep1_scaffold_42_prodigal-single.1__X__X__00143__D1405-1528
D2
high
residues 425-502
Domain cluster:
rep: MN504636.1__QFR59615.1__QuinobequinP09_62__00014__D2-57
D3
high
residues 593-618_645-734
Domain cluster:
rep: IMGVR_UViG_3300029596_000094-3300029596-Ga0307345_1012403__D181-212_236-315
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4w64B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.70 | 62.0 | 5.54e-01 | 95.7% | 86.9% |
| 3eaaA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.69 | 62.0 | 5.49e-01 | 96.6% | 90.7% |
| 1y12B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.69 | 61.0 | 5.51e-01 | 96.6% | 91.0% |
| 2hq7B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.65 | 57.0 | 5.31e-01 | 94.8% | 81.7% |
| 2hq9B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.63 | 55.0 | 5.25e-01 | 94.8% | 88.3% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.63 | 52.0 | 5.09e-01 | 93.1% | 82.3% |
| 2hhzA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 55.0 | 5.20e-01 | 95.7% | 81.9% |
| 2q9kA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 53.0 | 4.96e-01 | 100.0% | 75.5% |
| 3u5wA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 54.0 | 5.29e-01 | 94.8% | 87.3% |
| 2fbjH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 33.0 | 4.04e-01 | 72.4% | 93.2% |
| 3n54B03 | 3.30.300.210 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Nutrient germinant receptor protein C, domain 3 | 0.55 | 33.0 | 3.11e-01 | 84.5% | 46.2% |
| 2gysA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 34.0 | 3.89e-01 | 75.9% | 88.4% |
| 1em2A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 38.0 | 3.14e-01 | 75.0% | 72.4% |
| 5lf5A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 32.0 | 3.49e-01 | 74.1% | 77.4% |
| 1jeyA02 | 2.40.290.10 | Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › | 0.51 | 41.0 | 4.06e-01 | 89.7% | 96.0% |
| 1p4tA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 36.0 | 3.36e-01 | 74.1% | 89.0% |
| 4oifA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 27.0 | 3.63e-01 | 89.7% | 100.0% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4954552 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.84 | 73.0 | 6.46e-01 | 91.4% | 95.0% |
| 5079559 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.79 | 64.0 | 6.52e-01 | 85.3% | 99.1% |
| 5078836 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.78 | 69.0 | 7.16e-01 | 93.1% | 100.0% |
| 4929634 | 1.1.5.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 | 0.78 | 70.0 | 5.20e-01 | 94.8% | 45.2% |
| 3964955 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.78 | 68.0 | 6.03e-01 | 93.1% | 100.0% |
| 3502370 | 1.1.5.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 | 0.77 | 70.0 | 6.22e-01 | 96.6% | 93.8% |
| 3265120 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.74 | 68.0 | 5.86e-01 | 99.1% | 87.4% |
| 4466226 | 5087.1.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell | 0.74 | 34.0 | 3.62e-01 | 95.7% | 48.6% |
| 3264744 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.73 | 66.0 | 5.73e-01 | 99.1% | 87.4% |
| 3976188 | 1.1.13.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube | 0.71 | 64.0 | 5.62e-01 | 95.7% | 81.2% |
| 4009489 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.71 | 63.0 | 5.70e-01 | 96.6% | 91.0% |
| 3943316 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.70 | 65.0 | 5.82e-01 | 100.0% | 96.2% |
| 1563850 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.70 | 62.0 | 5.54e-01 | 95.7% | 86.9% |
| 3969384 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.69 | 62.0 | 5.56e-01 | 98.3% | 92.5% |
| 3058416 | 1.1.5.39 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD | 0.69 | 60.0 | 5.80e-01 | 93.1% | 92.1% |
| 3977123 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.68 | 61.0 | 5.46e-01 | 98.3% | 90.0% |
| 2387782 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.68 | 61.0 | 5.44e-01 | 100.0% | 92.9% |
| 4957560 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.67 | 57.0 | 5.53e-01 | 91.4% | 98.5% |
| 4928754 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.65 | 58.0 | 5.29e-01 | 95.7% | 86.7% |
| 4963864 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.65 | 57.0 | 5.46e-01 | 94.8% | 90.4% |
| 3288278 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.65 | 58.0 | 5.54e-01 | 97.4% | 85.2% |
| 2429452 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.64 | 58.0 | 5.57e-01 | 98.3% | 85.6% |
| 5040464 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 45.0 | 4.88e-01 | 81.0% | 88.4% |
| 4932075 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.64 | 56.0 | 5.37e-01 | 94.8% | 87.7% |
| 4982411 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.63 | 55.0 | 5.35e-01 | 95.7% | 90.8% |
| 4979014 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.63 | 55.0 | 5.27e-01 | 95.7% | 89.6% |
| 164720 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.62 | 53.0 | 4.96e-01 | 100.0% | 75.5% |
| 5038472 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.59 | 45.0 | 4.60e-01 | 79.3% | 90.9% |
| 4953386 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.58 | 50.0 | 4.75e-01 | 94.8% | 88.6% |
| 3916965 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.58 | 35.0 | 3.88e-01 | 75.0% | 74.7% |
| 4993408 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.56 | 28.0 | 2.57e-01 | 92.2% | 32.5% |
| 3884573 | 11.1.1.318 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL3Rb_N | 0.55 | 34.0 | 3.79e-01 | 75.0% | 80.0% |
| 5015019 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.54 | 29.0 | 3.81e-01 | 95.7% | 100.0% |
| 2859181 | 11.1.1.587 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › VEGFR1-3_N_Ig-like | 0.53 | 32.0 | 3.61e-01 | 73.3% | 81.2% |
| 5025780 | 210.2.1.0 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain | 0.53 | 47.0 | 3.81e-01 | 100.0% | 87.4% |
D4
medium
residues 335-410
Domain cluster:
rep: RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00512__D461-533
CATH (50)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pp6A02 | 2.40.10.210 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) | 0.75 | 50.0 | 5.50e-01 | 75.0% | 84.1% |
| 6f2mA02 | 2.40.30.290 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.72 | 63.0 | 6.03e-01 | 97.4% | 82.8% |
| 1v0fB03 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.72 | 63.0 | 6.12e-01 | 98.7% | 94.1% |
| 3c12A01 | 2.30.30.910 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 45.0 | 5.38e-01 | 78.9% | 98.0% |
| 1jb0E00 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 49.0 | 5.19e-01 | 73.7% | 100.0% |
| 3cpxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.69 | 51.0 | 5.50e-01 | 96.1% | 96.8% |
| 2dyiA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.68 | 59.0 | 5.77e-01 | 98.7% | 88.1% |
| 2zzeA03 | 2.40.30.130 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.67 | 57.0 | 5.21e-01 | 97.4% | 71.4% |
| 4dk0A02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.67 | 58.0 | 5.57e-01 | 98.7% | 96.7% |
| 3c4sA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 47.0 | 5.37e-01 | 76.3% | 100.0% |
| 2qggA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.66 | 58.0 | 5.50e-01 | 100.0% | 89.2% |
| 3fppA01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.66 | 57.0 | 5.21e-01 | 98.7% | 84.6% |
| 3dclA02 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.66 | 57.0 | 5.40e-01 | 98.7% | 91.2% |
| 2f1lA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.65 | 57.0 | 5.43e-01 | 97.4% | 89.9% |
| 4tkoB01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.65 | 57.0 | 5.37e-01 | 97.4% | 92.4% |
| 4zgnB00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.65 | 54.0 | 4.82e-01 | 89.5% | 75.7% |
| 2dpyA00 | 3.40.50.12240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 53.0 | 3.35e-01 | 100.0% | 16.6% |
| 1e62A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.64 | 56.0 | 4.72e-01 | 97.4% | 89.8% |
| 4yhbA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.64 | 56.0 | 4.74e-01 | 100.0% | 91.5% |
| 4kktA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.63 | 54.0 | 4.96e-01 | 98.7% | 90.5% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 45.0 | 4.54e-01 | 75.0% | 92.1% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 44.0 | 4.71e-01 | 73.7% | 87.7% |
| 4bb7B00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.62 | 47.0 | 3.30e-01 | 80.3% | 37.2% |
| 5z8lA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.62 | 47.0 | 4.00e-01 | 80.3% | 73.9% |
| 2vobB02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.62 | 48.0 | 3.48e-01 | 84.2% | 42.5% |
| 7cceA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.61 | 47.0 | 3.73e-01 | 81.6% | 94.7% |
| 1vloA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.61 | 47.0 | 4.42e-01 | 89.5% | 68.1% |
| 2ej9A02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 38.0 | 4.46e-01 | 71.1% | 100.0% |
| 4cshA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.60 | 47.0 | 3.66e-01 | 84.2% | 42.7% |
| 7xpkA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.59 | 46.0 | 3.70e-01 | 81.6% | 62.8% |
| 2as9B01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 42.0 | 3.88e-01 | 78.9% | 56.4% |
| 3exmA01 | 2.40.380.10 | Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like | 0.59 | 44.0 | 3.25e-01 | 78.9% | 100.0% |
| 3pieC09 | 2.30.30.750 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 53.0 | 4.82e-01 | 98.7% | 80.8% |
| 1whlA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.59 | 44.0 | 4.09e-01 | 78.9% | 90.5% |
| 2digA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 42.0 | 4.46e-01 | 78.9% | 85.3% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 40.0 | 4.35e-01 | 71.1% | 93.5% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 49.0 | 5.10e-01 | 97.4% | 98.6% |
| 4n0rA03 | 2.60.40.3950 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 49.0 | 4.36e-01 | 97.4% | 84.5% |
| 2aj2A01 | 3.40.1740.10 | Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like | 0.57 | 42.0 | 3.95e-01 | 81.6% | 68.0% |
| 2k5fA01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.57 | 43.0 | 4.22e-01 | 84.2% | 88.0% |
| 6vilA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.56 | 46.0 | 3.77e-01 | 90.8% | 66.9% |
| 2avwD01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.55 | 45.0 | 3.77e-01 | 93.4% | 83.0% |
| 1xkgA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.55 | 46.0 | 3.09e-01 | 93.4% | 84.2% |
| 2ws9100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 46.0 | 3.32e-01 | 100.0% | 72.8% |
| 4ft4B01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.53 | 47.0 | 3.80e-01 | 100.0% | 84.0% |
| 6o5cA02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.53 | 44.0 | 4.48e-01 | 97.4% | 97.4% |
| 2kdsA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 39.0 | 3.77e-01 | 80.3% | 89.5% |
| 6tqdC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 45.0 | 4.20e-01 | 97.4% | 82.3% |
| 2aneH00 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.51 | 45.0 | 3.98e-01 | 96.1% | 89.9% |
| 3ttyA02 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.51 | 35.0 | 2.67e-01 | 75.0% | 78.6% |
ECOD (89)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995824 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.82 | 74.0 | 7.52e-01 | 97.4% | 100.0% |
| 3488003 | 1.1.7.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH | 0.75 | 66.0 | 6.41e-01 | 96.1% | 92.9% |
| 4028468 | 1.1.7.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH | 0.74 | 68.0 | 6.04e-01 | 100.0% | 82.9% |
| 3941087 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 65.0 | 5.79e-01 | 97.4% | 92.4% |
| 3837995 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 49.0 | 5.71e-01 | 77.6% | 96.4% |
| 1030933 | 1.1.7.29 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › End_beta_barrel | 0.73 | 65.0 | 6.17e-01 | 100.0% | 93.3% |
| 4255584 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.73 | 64.0 | 5.86e-01 | 97.4% | 86.0% |
| 4262187 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.72 | 63.0 | 5.89e-01 | 97.4% | 86.3% |
| 3951894 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.72 | 64.0 | 5.91e-01 | 97.4% | 91.6% |
| 4188663 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.72 | 63.0 | 5.89e-01 | 97.4% | 85.3% |
| 4060133 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.72 | 64.0 | 6.01e-01 | 97.4% | 90.0% |
| 4211588 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 65.0 | 3.93e-01 | 98.7% | 17.6% |
| 4161414 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.71 | 63.0 | 5.73e-01 | 98.7% | 84.0% |
| 5019880 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 64.0 | 5.83e-01 | 100.0% | 81.0% |
| 4209058 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.71 | 62.0 | 5.69e-01 | 97.4% | 85.0% |
| 4229140 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.70 | 63.0 | 5.92e-01 | 97.4% | 92.2% |
| 3759036 | 11.21.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein | 0.70 | 63.0 | 5.84e-01 | 98.7% | 93.7% |
| 4521547 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.70 | 62.0 | 5.89e-01 | 97.4% | 83.3% |
| 4964768 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 51.0 | 5.70e-01 | 77.6% | 100.0% |
| 4636051 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.70 | 62.0 | 5.56e-01 | 98.7% | 88.6% |
| 4267752 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.69 | 61.0 | 5.71e-01 | 98.7% | 88.4% |
| 4452870 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.69 | 61.0 | 5.81e-01 | 97.4% | 91.1% |
| 4194151 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.69 | 62.0 | 5.87e-01 | 98.7% | 88.9% |
| 4950482 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 58.0 | 5.89e-01 | 94.7% | 93.3% |
| 4874232 | 4.1.1.29 ↗ | beta barrels › SH3 › SH3 › SH3 › PSI_PsaE | 0.69 | 49.0 | 5.17e-01 | 75.0% | 100.0% |
| 4391995 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.69 | 61.0 | 5.86e-01 | 97.4% | 91.8% |
| 3715285 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.68 | 51.0 | 4.01e-01 | 78.9% | 45.2% |
| 3585492 | 4.1.1.103 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_12 | 0.68 | 52.0 | 4.56e-01 | 80.3% | 67.3% |
| 4203993 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.68 | 60.0 | 5.62e-01 | 98.7% | 86.3% |
| 4956630 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.68 | 52.0 | 4.11e-01 | 81.6% | 43.9% |
| 4132820 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.68 | 60.0 | 5.42e-01 | 98.7% | 87.6% |
| 4042679 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.68 | 60.0 | 5.80e-01 | 97.4% | 92.9% |
| 1281033 | 1.1.7.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF4438 | 0.68 | 59.0 | 4.72e-01 | 100.0% | 87.5% |
| 4634180 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.68 | 60.0 | 5.67e-01 | 98.7% | 92.2% |
| 4257012 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.67 | 59.0 | 5.42e-01 | 97.4% | 85.0% |
| 5038570 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.67 | 51.0 | 4.35e-01 | 80.3% | 54.2% |
| 4300895 | 4.11.1.6 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › PF31032 | 0.67 | 50.0 | 4.08e-01 | 78.9% | 50.7% |
| 4619658 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.67 | 59.0 | 5.54e-01 | 98.7% | 85.3% |
| 4425722 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.67 | 58.0 | 5.56e-01 | 97.4% | 91.1% |
| 4286344 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.67 | 60.0 | 5.54e-01 | 98.7% | 91.6% |
| 3966626 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.67 | 58.0 | 5.53e-01 | 97.4% | 88.9% |
| 4205951 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.66 | 58.0 | 5.42e-01 | 97.4% | 86.3% |
| 4087903 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.66 | 58.0 | 5.49e-01 | 97.4% | 91.1% |
| 3944005 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.66 | 57.0 | 4.79e-01 | 97.4% | 63.2% |
| 3901117 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.66 | 47.0 | 3.49e-01 | 73.7% | 33.9% |
| 3188394 | 4.8.1.22 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 | 0.66 | 50.0 | 4.24e-01 | 80.3% | 75.0% |
| 3753231 | 4.1.1.226 ↗ | beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor | 0.66 | 48.0 | 4.80e-01 | 77.6% | 81.2% |
| 4208972 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.66 | 57.0 | 5.26e-01 | 97.4% | 81.0% |
| 4381868 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.66 | 58.0 | 5.51e-01 | 98.7% | 90.0% |
| 3876680 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.66 | 48.0 | 4.40e-01 | 77.6% | 64.0% |
| 4666540 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.65 | 56.0 | 5.48e-01 | 97.4% | 94.1% |
| 3551576 | 4.1.1.226 ↗ | beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor | 0.65 | 50.0 | 5.05e-01 | 81.6% | 85.3% |
| 3768346 | 4.1.1.226 ↗ | beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor | 0.65 | 49.0 | 4.94e-01 | 80.3% | 82.7% |
| 3702154 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 47.0 | 4.79e-01 | 76.3% | 80.0% |
| 3172185 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 57.0 | 5.07e-01 | 100.0% | 80.0% |
| 5058648 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 57.0 | 5.33e-01 | 100.0% | 98.9% |
| 4120629 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.64 | 49.0 | 4.97e-01 | 82.9% | 90.7% |
| 3949052 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 55.0 | 5.27e-01 | 98.7% | 93.3% |
| 5051220 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 57.0 | 5.39e-01 | 98.7% | 91.1% |
| 3812766 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.64 | 46.0 | 4.82e-01 | 76.3% | 97.1% |
| 4968409 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.64 | 55.0 | 5.06e-01 | 97.4% | 83.0% |
| 147797 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.63 | 45.0 | 4.71e-01 | 73.7% | 88.2% |
| 3492757 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 47.0 | 4.86e-01 | 78.9% | 92.9% |
| 3886492 | 4.1.1.154 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4772 | 0.63 | 46.0 | 4.70e-01 | 76.3% | 86.7% |
| 2672307 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.63 | 49.0 | 3.85e-01 | 82.9% | 70.5% |
| 3505711 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.63 | 47.0 | 4.57e-01 | 78.9% | 74.1% |
| 3828614 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.63 | 49.0 | 4.30e-01 | 82.9% | 88.2% |
| 4220217 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.62 | 53.0 | 4.99e-01 | 97.4% | 84.2% |
| 3738641 | 4.1.1.102 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_3 | 0.62 | 47.0 | 4.81e-01 | 81.6% | 92.0% |
| 3263467 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.62 | 43.0 | 4.25e-01 | 72.4% | 85.0% |
| 3497365 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.62 | 42.0 | 4.86e-01 | 71.1% | 100.0% |
| 3670066 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.61 | 47.0 | 3.67e-01 | 80.3% | 53.5% |
| 3586469 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.61 | 48.0 | 4.60e-01 | 82.9% | 77.6% |
| 4565130 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 47.0 | 4.34e-01 | 81.6% | 76.8% |
| 4160866 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.61 | 52.0 | 5.01e-01 | 98.7% | 86.7% |
| 4269844 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.61 | 45.0 | 4.67e-01 | 80.3% | 92.9% |
| 1293874 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.61 | 47.0 | 3.68e-01 | 84.2% | 42.4% |
| 3317030 | 4.1.1.366 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26738 | 0.60 | 44.0 | 4.89e-01 | 77.6% | 100.0% |
| 3730229 | 4.1.1.102 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_3 | 0.60 | 46.0 | 4.70e-01 | 97.4% | 82.7% |
| 3720515 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 52.0 | 4.95e-01 | 100.0% | 87.8% |
| 3729344 | 4.1.1.25 ↗ | beta barrels › SH3 › SH3 › SH3 › PAZ | 0.60 | 45.0 | 3.68e-01 | 80.3% | 84.1% |
| 3781440 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.59 | 46.0 | 4.56e-01 | 82.9% | 95.0% |
| 4078993 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.58 | 47.0 | 4.54e-01 | 90.8% | 77.8% |
| 1108154 | 12.1.1.41 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF5605 | 0.57 | 49.0 | 4.38e-01 | 97.4% | 86.1% |
| 3229601 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.56 | 38.0 | 4.18e-01 | 75.0% | 90.0% |
| 3788176 | 9.2.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin | 0.54 | 39.0 | 2.88e-01 | 78.9% | 97.7% |
| 3598532 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.54 | 44.0 | 3.32e-01 | 93.4% | 99.5% |
| 4428238 | 1.1.8.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C | 0.53 | 41.0 | 3.58e-01 | 86.8% | 81.6% |
| 3596775 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.52 | 43.0 | 3.68e-01 | 96.1% | 63.7% |
D5
medium
residues 530-581_619-644
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4aw7A01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 31.0 | 2.72e-01 | 89.7% | 37.3% |