←Back to structures

NC_041964.1__YP_009604332.1__FDH89_gp32__00032

Bact-Vir

NC_041964.1__YP_009604332.1__FDH89_gp32__00032

Identity

Accession:
NC_041964 ↗
Kingdom:
phage

Quality

88.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kochitakasuvirus› Pseudomonas_phage_phiR18

TaxID: 1752027

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 255-335
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 44.0 4.28e-01 74.1% 81.1%
3mtsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 36.0 4.06e-01 76.5% 79.0%
1fgsA01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.59 40.0 2.82e-01 71.6% 84.2%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.57 38.0 3.60e-01 95.1% 56.7%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.56 41.0 3.51e-01 80.2% 90.7%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.55 39.0 3.18e-01 76.5% 82.4%
4nyqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 41.0 3.39e-01 81.5% 76.5%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 39.0 4.03e-01 84.0% 82.4%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.54 38.0 3.67e-01 74.1% 90.4%
3vskA01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.53 37.0 3.15e-01 71.6% 93.2%
2m2lA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 39.0 4.16e-01 97.5% 95.5%
1y4wA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 41.0 2.79e-01 88.9% 99.4%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.53 37.0 2.60e-01 74.1% 98.9%
7mi4A02 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.51 36.0 3.72e-01 95.1% 79.7%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.80e-01 85.2% 77.1%
4l5rC02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 3.67e-01 79.0% 86.5%
6dxwA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.51 37.0 2.84e-01 82.7% 98.3%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.71e-01 75.3% 98.7%
4k22B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 44.0 3.16e-01 98.8% 83.7%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4935086 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.59 51.0 4.17e-01 97.5% 92.3%
3964664 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.58 36.0 3.87e-01 75.3% 73.5%
3717674 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.56 39.0 3.85e-01 72.8% 76.7%
5044391 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 34.0 4.25e-01 86.4% 100.0%
4326361 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.56 40.0 2.82e-01 77.8% 69.7%
4003473 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 29.0 3.16e-01 74.1% 58.5%
1567587 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.54 35.0 3.71e-01 77.8% 74.6%
3672647 5.1.4.297 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.54 44.0 2.78e-01 88.9% 78.2%
3314585 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.53 37.0 2.66e-01 72.8% 42.7%
4165165 2.1.1.35 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rho_RNA_bind 0.53 42.0 4.08e-01 88.9% 100.0%
3936855 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.52 43.0 3.25e-01 96.3% 87.6%
4003932 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.51 40.0 3.57e-01 86.4% 87.5%
4173879 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.50 43.0 2.81e-01 100.0% 73.6%
3275758 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.50 41.0 2.55e-01 90.1% 95.6%
3248952 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 37.0 3.67e-01 76.5% 96.5%
D2 high residues 341-421
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e3mB02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.59 52.0 4.48e-01 100.0% 96.2%
2acaA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.58 51.0 4.04e-01 100.0% 49.4%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 45.0 4.40e-01 85.2% 91.2%
2uytA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 46.0 3.29e-01 90.1% 99.1%
1ewqA02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.55 49.0 4.37e-01 100.0% 91.5%
1o5yA00 3.10.690.10 Alpha Beta › Roll › Bifunctional nuclease domain › Bifunctional nuclease domain 0.53 45.0 3.74e-01 92.6% 95.8%
3kksB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 47.0 3.84e-01 100.0% 88.2%
7ue1B01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 46.0 3.86e-01 100.0% 90.3%
2cr4A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 35.0 3.38e-01 70.4% 90.9%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 46.0 3.81e-01 100.0% 94.6%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 45.0 3.64e-01 100.0% 91.4%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3966083 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.59 43.0 3.89e-01 77.8% 96.5%
4228437 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.59 53.0 4.50e-01 98.8% 84.6%
162586 868.1.1.1 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.59 52.0 4.08e-01 100.0% 47.8%
185599 3392.1.1.0 ↗ a+b two layers › Cytoplasmic domain of BfpC › Cytoplasmic domain of BfpC › Cytoplasmic domain of BfpC 0.59 49.0 3.94e-01 97.5% 46.3%
4983641 2484.1.1.49 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.59 46.0 3.85e-01 87.7% 96.0%
4368826 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.59 52.0 4.18e-01 100.0% 81.9%
5043655 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 46.0 3.91e-01 87.7% 85.7%
4976249 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 45.0 4.03e-01 85.2% 96.5%
3818481 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.54 40.0 3.00e-01 81.5% 90.8%
5003276 331.1.1.5 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.53 28.0 3.07e-01 93.8% 60.0%
5061488 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.53 47.0 3.76e-01 100.0% 80.6%
1349611 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.53 47.0 3.85e-01 100.0% 89.4%
2575628 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.53 47.0 3.86e-01 100.0% 82.4%
3926267 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 47.0 3.73e-01 97.5% 87.5%
3924869 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 47.0 3.71e-01 100.0% 78.8%
3937782 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.53 47.0 3.74e-01 100.0% 76.4%
3507809 1.1.1.1 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp 0.53 23.0 2.75e-01 96.3% 50.9%
3781102 7527.1.1.1 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE 0.52 41.0 2.90e-01 87.7% 61.0%
4929239 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.51 43.0 2.91e-01 95.1% 61.8%
1945733 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.51 45.0 3.63e-01 100.0% 79.5%
943 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.51 39.0 3.66e-01 96.3% 67.0%
3646441 2484.1.1.205 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27035 0.50 44.0 4.00e-01 98.8% 93.6%
5049591 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 37.0 4.11e-01 92.6% 96.9%
5019289 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 42.0 3.23e-01 97.5% 94.1%
D3 high residues 651-793
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 31.0 3.93e-01 73.4% 75.0%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 31.0 3.93e-01 74.8% 75.3%
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 30.0 4.01e-01 74.1% 83.8%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 31.0 3.89e-01 74.8% 76.5%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 31.0 3.75e-01 74.8% 71.4%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 29.0 3.79e-01 74.1% 80.5%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 30.0 3.80e-01 74.8% 79.3%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 31.0 3.74e-01 76.2% 73.1%
2ly1A03 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.60 29.0 3.74e-01 74.1% 79.0%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 29.0 3.52e-01 74.8% 70.7%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 28.0 3.48e-01 74.8% 71.3%
2f33A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 30.0 3.70e-01 74.8% 80.5%
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.54 23.0 3.20e-01 82.5% 78.6%
2v4jB03 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 21.0 2.81e-01 72.7% 69.2%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3482928 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.67 33.0 4.51e-01 74.1% 94.3%
3880787 101.1.2.526 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27602 0.66 33.0 3.70e-01 74.8% 60.0%
3890162 101.1.2.526 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27602 0.66 32.0 4.23e-01 74.1% 86.7%
5003128 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 33.0 3.93e-01 74.8% 70.0%
4990274 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 31.0 3.53e-01 74.1% 59.0%
4962470 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 31.0 3.88e-01 74.8% 75.3%
3587554 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 31.0 3.66e-01 74.8% 65.0%
3286147 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.64 31.0 3.15e-01 74.8% 45.7%
3605936 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 31.0 3.66e-01 74.8% 65.0%
2409292 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.63 32.0 3.64e-01 74.8% 63.5%
4999528 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 31.0 3.96e-01 75.5% 78.8%
4933162 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 30.0 4.25e-01 74.1% 98.5%
3588171 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.63 32.0 3.19e-01 75.5% 46.2%
5082043 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.63 31.0 3.17e-01 74.8% 46.4%
5044327 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 31.0 3.57e-01 74.1% 64.0%
4619500 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.62 36.0 4.30e-01 74.8% 86.0%
4958024 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.62 33.0 3.95e-01 76.2% 76.8%
5053957 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 31.0 4.22e-01 74.8% 98.5%
3744213 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.61 32.0 3.30e-01 74.8% 51.4%
5033207 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 32.0 3.41e-01 75.5% 56.8%
3165321 101.1.2.280 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.61 30.0 3.72e-01 74.8% 74.4%
4229465 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 29.0 3.77e-01 74.1% 81.2%
3599513 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 31.0 3.23e-01 71.3% 53.1%
3633326 101.1.2.33 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_beta 0.60 32.0 3.60e-01 75.5% 67.6%
3945466 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 30.0 3.58e-01 75.5% 69.0%
5013440 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 31.0 3.15e-01 76.2% 49.3%
4966069 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 31.0 3.72e-01 75.5% 76.7%
3937849 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.59 32.0 4.08e-01 76.2% 93.8%
4964272 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 28.0 3.16e-01 74.1% 58.1%
5029803 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 31.0 3.25e-01 74.8% 56.2%
5075009 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 31.0 3.63e-01 76.2% 76.8%
5075649 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 28.0 3.55e-01 75.5% 79.5%
3513751 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.56 31.0 3.74e-01 75.5% 83.3%
3313157 101.1.2.524 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7625 0.56 30.0 3.92e-01 75.5% 98.7%
3376444 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.56 31.0 3.40e-01 76.2% 65.2%
5001098 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 28.0 3.35e-01 74.1% 74.4%
4947811 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 32.0 3.51e-01 80.4% 72.2%
3584275 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 32.0 3.76e-01 76.9% 85.0%
3279756 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.51 30.0 3.08e-01 76.2% 57.9%
3355197 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 34.0 4.02e-01 82.5% 97.0%
D4 medium residues 1-80_184-200
PDB
Domain cluster: rep: OQ676962.1__WHB31223.1__X__00058__D8-111_212-229
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.53 38.0 3.95e-01 93.8% 79.3%
2d9qB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 32.0 3.31e-01 91.8% 63.8%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.51 36.0 3.71e-01 93.8% 76.6%
4oq1A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 34.0 3.44e-01 100.0% 68.3%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3503374 11.1.4.98 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Ig_NOMO 0.58 33.0 3.74e-01 92.8% 73.3%
4032501 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.55 29.0 3.22e-01 83.5% 62.7%
4976925 821.1.1.4 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 0.54 44.0 3.77e-01 88.7% 95.4%
4976498 4076.3.1.5 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.52 23.0 2.76e-01 89.7% 56.7%
D5 medium residues 81-183_201-254
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2faoA01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.66 52.0 4.23e-01 81.5% 75.2%
2iruA02 3.30.70.3300 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 45.0 4.83e-01 70.1% 92.0%
2mkcA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 40.0 4.49e-01 75.8% 90.7%
1nbeB01 3.30.70.140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aspartate carbamoyltransferase regulatory subunit, N-terminal domain 0.58 33.0 4.11e-01 86.0% 93.5%
2hw0A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.58 37.0 4.27e-01 76.4% 88.7%
3to8A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 38.0 4.47e-01 73.2% 100.0%
1r9wA00 3.40.1310.10 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.57 38.0 4.09e-01 75.2% 76.8%
1qm9A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 35.0 4.26e-01 71.3% 100.0%
3dkxA01 3.40.1310.30 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.55 40.0 4.33e-01 75.8% 93.3%
2lxfA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 31.0 3.44e-01 71.3% 71.1%
1u6fA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 36.0 3.84e-01 100.0% 77.0%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031372 862.1.1.12 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › PF29905 0.69 55.0 5.03e-01 86.6% 64.5%
3471991 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.63 40.0 3.79e-01 73.9% 52.6%
5011497 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.62 44.0 4.05e-01 78.3% 57.0%
3787035 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.59 39.0 3.94e-01 74.5% 65.0%
3250924 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 38.0 4.54e-01 86.6% 100.0%
3666735 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.59 27.0 3.56e-01 72.0% 76.7%
3520543 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.59 34.0 4.30e-01 75.8% 98.9%
3602014 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.57 34.0 4.04e-01 81.5% 88.6%
4030156 304.9.1.9 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_2 0.57 41.0 4.47e-01 75.2% 93.1%
3934426 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.56 37.0 4.06e-01 85.4% 81.6%
3809469 304.9.1.57 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › zf-CCHC_4 0.55 33.0 4.01e-01 83.4% 92.0%
3873624 304.9.1.6 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 0.55 34.0 3.69e-01 70.7% 71.1%
3705974 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.55 35.0 3.97e-01 73.2% 87.3%
3217163 304.9.1.23 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_5 0.55 39.0 4.31e-01 77.1% 92.0%
3755360 304.9.1.6 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 0.55 34.0 3.04e-01 71.3% 41.3%
3596072 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.55 37.0 4.00e-01 75.8% 80.0%
4179054 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.55 35.0 3.73e-01 71.3% 72.1%
3627328 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.54 35.0 4.05e-01 97.5% 91.8%
3722910 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 38.0 4.30e-01 73.9% 100.0%
4027899 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.53 26.0 3.31e-01 72.0% 80.7%
3316406 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.53 36.0 4.06e-01 87.9% 93.0%
3934524 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.52 40.0 4.13e-01 82.2% 86.9%
4026946 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.51 25.0 3.22e-01 73.2% 82.4%
3791083 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.50 26.0 3.30e-01 72.6% 87.1%
D6 medium residues 435-466_486-504_568-631
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eo4A00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.52 36.0 3.30e-01 70.4% 96.6%
D7 medium residues 467-485_505-567_632-650
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19263.6 best DUF5906 30.3 8.30e-07 80.2% 57.5%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6ketA01 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.55 46.0 3.18e-01 91.1% 47.2%
7qqfA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 38.0 2.76e-01 81.2% 95.1%