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NC_041964.1__YP_009604344.1__FDH89_gp44__00044

Bact-Vir

Identity

Accession:: NC_041964 ↗
Kingdom:: phage

Quality

88.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kochitakasuvirus› Pseudomonas_phage_phiR18

TaxID: 1752027

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 46-119

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3mcfA00	3.90.79.10	Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase	0.59	42.0	3.48e-01	74.3%	86.9%
1feuA01	2.40.240.10	Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P	0.58	46.0	4.35e-01	87.8%	86.8%
4k6eA00	3.90.79.10	Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase	0.57	39.0	3.21e-01	73.0%	87.5%
3edsA00	3.90.79.10	Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase	0.56	39.0	3.29e-01	74.3%	80.5%
4fsdA02	3.40.5.100	Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 ›	0.55	33.0	3.21e-01	78.4%	52.3%
2lueA00	3.10.20.90	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1	0.53	41.0	3.58e-01	86.5%	81.5%
3vqiA01	3.10.20.620	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.53	38.0	3.38e-01	77.0%	88.0%
3dadA00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.52	36.0	2.38e-01	71.6%	31.5%
7bwhA00	3.10.120.10	Alpha Beta › Roll › Flavocytochrome B2; Chain A, domain 1 › Cytochrome b5-like heme/steroid binding domain	0.51	43.0	4.17e-01	98.6%	83.0%
3jc6C00	1.20.58.2050	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	31.0	2.48e-01	79.7%	27.7%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1295897	221.1.1.46 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_ICP0_bdg	0.60	45.0	3.65e-01	82.4%	72.3%
3605970	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.59	42.0	3.79e-01	77.0%	92.7%
3332553	239.1.1.0 ↗	beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like	0.59	48.0	4.09e-01	89.2%	85.8%
4995745	2002.1.1.0 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels	0.56	43.0	2.84e-01	82.4%	27.4%
3528514	219.1.1.81 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY-3_4_CD	0.55	40.0	2.71e-01	81.1%	75.4%
3578885	221.15.1.0 ↗	a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase	0.54	44.0	3.84e-01	94.6%	84.6%
3651649	3397.1.1.1 ↗	a+b complex topology › Tic22 › Tic22 › Tic22 › Tic22	0.53	38.0	3.34e-01	75.7%	90.4%
2667568	221.1.1.18 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ATG8	0.53	41.0	3.48e-01	86.5%	72.9%
2550455	221.1.1.18 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ATG8	0.53	42.0	3.65e-01	87.8%	81.0%
185721	3397.1.1.1 ↗	a+b complex topology › Tic22 › Tic22 › Tic22 › Tic22	0.52	37.0	3.25e-01	77.0%	87.3%
3635213	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.51	40.0	3.31e-01	86.5%	93.7%
3878062	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.51	37.0	3.11e-01	77.0%	93.8%
3783288	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.51	37.0	3.33e-01	79.7%	99.1%