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NC_041964.1__YP_009604348.1__FDH89_gp48__00048
Bact-VirNC_041964.1__YP_009604348.1__FDH89_gp48__00048
Identity
- Accession:
- NC_041964 ↗
- Kingdom:
- phage
Quality
69.3
mean pLDDT
Taxonomy
TaxID: 1752027
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-94
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jwkA00 | 3.30.420.270 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.84 | 48.0 | 5.02e-01 | 75.0% | 62.2% |
| 1okeB02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.66 | 41.0 | 4.22e-01 | 86.3% | 64.9% |
| 4h63Q04 | 3.90.1150.120 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.66 | 45.0 | 4.01e-01 | 88.7% | 49.1% |
| 2m7oA00 | 3.10.450.400 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 | 0.64 | 43.0 | 4.53e-01 | 82.5% | 78.6% |
| 1j3mA00 | 3.30.310.70 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TT1751-like domain | 0.63 | 49.0 | 4.21e-01 | 83.7% | 66.9% |
| 2nykA01 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.62 | 44.0 | 3.57e-01 | 73.8% | 77.7% |
| 3d2uE01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.62 | 42.0 | 3.21e-01 | 70.0% | 89.4% |
| 1q9uA00 | 3.30.310.70 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TT1751-like domain | 0.61 | 47.0 | 3.98e-01 | 81.2% | 64.8% |
| 3a58A01 | 2.30.29.90 | Mainly Beta › Roll › PH-domain like › | 0.61 | 52.0 | 4.07e-01 | 95.0% | 62.1% |
| 1tltA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.59 | 43.0 | 3.30e-01 | 76.2% | 33.3% |
| 4mp8A01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.58 | 44.0 | 3.50e-01 | 80.0% | 55.3% |
| 2k3dA00 | 3.10.450.130 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › folded 79 residue fragment of lin0334 like domains | 0.58 | 42.0 | 4.13e-01 | 80.0% | 70.1% |
| 1ei5A02 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 43.0 | 4.29e-01 | 80.0% | 82.9% |
| 7lgjA01 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.57 | 34.0 | 2.47e-01 | 86.3% | 21.2% |
| 4q5eA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 33.0 | 3.46e-01 | 98.8% | 62.7% |
| 2z3zA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.55 | 47.0 | 2.99e-01 | 100.0% | 18.5% |
| 5nslA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 47.0 | 3.02e-01 | 97.5% | 32.2% |
| 1oygA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 48.0 | 3.09e-01 | 100.0% | 86.9% |
| 6cmzB03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.55 | 46.0 | 4.11e-01 | 97.5% | 86.4% |
| 3n4rA00 | 3.90.1150.80 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.54 | 42.0 | 4.08e-01 | 86.3% | 77.4% |
| 3v5nB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 46.0 | 3.57e-01 | 96.2% | 75.0% |
| 2a8xA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.53 | 44.0 | 3.93e-01 | 96.2% | 81.1% |
| 1ojtA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.53 | 45.0 | 4.02e-01 | 100.0% | 96.7% |
| 7qi3A01 | 3.30.2140.20 | Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › | 0.53 | 45.0 | 3.10e-01 | 100.0% | 40.1% |
| 4k35A02 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.53 | 45.0 | 3.34e-01 | 93.8% | 71.6% |
| 8ajkA02 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.53 | 44.0 | 4.07e-01 | 97.5% | 96.3% |
| 6o5cA02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.53 | 35.0 | 3.67e-01 | 70.0% | 85.5% |
| 4agiA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.52 | 46.0 | 3.08e-01 | 98.8% | 28.7% |
| 1mhnA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 34.0 | 3.84e-01 | 70.0% | 89.8% |
| 7szeB02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.52 | 39.0 | 3.06e-01 | 81.2% | 48.9% |
| 3nuhB02 | 3.30.300.370 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.52 | 39.0 | 3.43e-01 | 81.2% | 69.4% |
| 2yt4A03 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 38.0 | 3.55e-01 | 80.0% | 69.2% |
| 2v43A01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.52 | 43.0 | 3.34e-01 | 93.8% | 85.2% |
| 1w0pA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 41.0 | 3.19e-01 | 86.3% | 61.6% |
| 1vjvA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.52 | 44.0 | 2.98e-01 | 95.0% | 96.4% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 38.0 | 3.57e-01 | 81.2% | 85.1% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4978331 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.73 | 46.0 | 4.94e-01 | 77.5% | 74.3% |
| 3576228 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.70 | 43.0 | 4.15e-01 | 77.5% | 54.3% |
| 5051418 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.69 | 44.0 | 3.63e-01 | 72.5% | 37.8% |
| 3993341 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.68 | 46.0 | 4.58e-01 | 71.2% | 90.6% |
| 3244257 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.64 | 42.0 | 2.99e-01 | 83.7% | 20.8% |
| 3900377 | 220.1.1.41 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Sharpin_PH | 0.64 | 50.0 | 4.32e-01 | 85.0% | 76.0% |
| 5002402 | 3153.1.1.0 ↗ | a+b two layers › PipX › PipX › PipX | 0.63 | 46.0 | 4.77e-01 | 86.3% | 82.7% |
| 3415741 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.63 | 43.0 | 3.58e-01 | 85.0% | 39.3% |
| 3179848 | 241.15.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N | 0.63 | 50.0 | 4.12e-01 | 85.0% | 55.4% |
| 3228083 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.62 | 44.0 | 3.07e-01 | 86.3% | 22.7% |
| 4598542 | 5046.1.1.1 ↗ | extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b › ATP-synt_B | 0.61 | 31.0 | 2.19e-01 | 72.5% | 15.5% |
| 5072132 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.61 | 39.0 | 3.93e-01 | 76.2% | 65.0% |
| 1323413 | 330.10.1.1 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO | 0.60 | 44.0 | 4.03e-01 | 76.2% | 70.6% |
| 4962147 | 2003.1.1.391 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA_C3 | 0.60 | 43.0 | 2.84e-01 | 76.2% | 18.9% |
| 3669346 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.60 | 40.0 | 4.02e-01 | 77.5% | 68.4% |
| 3856870 | 708.1.1.9 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › CG-1 | 0.60 | 44.0 | 3.78e-01 | 77.5% | 58.9% |
| 3609111 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 51.0 | 4.20e-01 | 96.2% | 68.7% |
| 3280624 | 3844.2.1.1 ↗ | a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG | 0.58 | 51.0 | 3.65e-01 | 100.0% | 40.8% |
| 4971247 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.58 | 40.0 | 4.07e-01 | 77.5% | 72.5% |
| 5001326 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.58 | 43.0 | 3.08e-01 | 97.5% | 26.1% |
| 5024027 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.58 | 45.0 | 3.74e-01 | 82.5% | 77.8% |
| 3217717 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.57 | 49.0 | 3.16e-01 | 100.0% | 19.3% |
| 4993189 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.57 | 38.0 | 4.24e-01 | 76.2% | 91.7% |
| 3880284 | 868.1.1.3 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 | 0.57 | 45.0 | 3.41e-01 | 88.7% | 46.3% |
| 4955776 | 881.2.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like | 0.56 | 44.0 | 3.69e-01 | 100.0% | 47.3% |
| 3258731 | 241.15.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N | 0.56 | 44.0 | 3.68e-01 | 85.0% | 52.1% |
| 3590812 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.56 | 31.0 | 3.47e-01 | 72.5% | 70.0% |
| 5059043 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 46.0 | 3.04e-01 | 91.3% | 31.9% |
| 3239518 | 4099.1.1.28 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF29108 | 0.56 | 40.0 | 4.05e-01 | 85.0% | 77.5% |
| 3226291 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 38.0 | 3.38e-01 | 85.0% | 46.4% |
| 3280935 | 300.1.1.12 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DUF5753 | 0.54 | 44.0 | 3.48e-01 | 96.2% | 90.7% |
| 3739215 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.54 | 39.0 | 2.75e-01 | 77.5% | 41.2% |
| 3196041 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.53 | 46.0 | 2.97e-01 | 97.5% | 46.9% |
| 3474880 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.53 | 39.0 | 3.76e-01 | 77.5% | 80.0% |
| 3636368 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.53 | 42.0 | 3.55e-01 | 87.5% | 67.9% |
| 3452325 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.53 | 45.0 | 3.39e-01 | 96.2% | 95.1% |
| 3216450 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.52 | 40.0 | 3.33e-01 | 83.7% | 44.7% |
| 3599323 | 330.3.1.1 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 | 0.52 | 36.0 | 3.55e-01 | 73.8% | 85.6% |
| 4449649 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 45.0 | 2.86e-01 | 98.8% | 23.9% |
| 4022742 | 3385.1.1.0 ↗ | beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 | 0.52 | 38.0 | 3.15e-01 | 78.8% | 91.9% |
| 3970166 | 330.10.1.0 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain | 0.52 | 38.0 | 3.60e-01 | 80.0% | 71.0% |
| 3784224 | 220.1.1.70 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_5 | 0.52 | 44.0 | 3.81e-01 | 96.2% | 79.2% |
| 4982943 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 39.0 | 3.32e-01 | 83.7% | 87.9% |
| 3490300 | 243.4.1.6 ↗ | a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › Radial_spoke | 0.50 | 42.0 | 3.24e-01 | 95.0% | 42.4% |
| 3396735 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 40.0 | 3.41e-01 | 85.0% | 83.1% |