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NC_041968.1__YP_009604739.1__FDH93_gp112__00112

Bact-Vir

NC_041968.1__YP_009604739.1__FDH93_gp112__00112

Identity

Accession:
NC_041968 ↗
Kingdom:
phage

Quality

94.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vandenendeviridae› Nankokuvirus› Pseudomonas_phage_vB_PaeM_G1

TaxID: 1983539

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-65
PDB
Domain cluster: rep: LacPavin_0818_WC55_scaffold_56344_prodigal-single.1__X__X__00242__D8-54
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fxdC00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.76 52.0 5.65e-01 70.5% 96.0%
6a3kA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.73 56.0 4.36e-01 82.0% 93.0%
1xjaB00 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.73 57.0 4.25e-01 85.2% 64.9%
2bduA02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.69 53.0 5.02e-01 85.2% 98.6%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 47.0 4.42e-01 88.5% 62.2%
2jmkA00 3.30.420.600 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Thermoplasma acidophilum protein TA0956 0.63 50.0 4.15e-01 90.2% 48.2%
7nc3F01 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 54.0 4.41e-01 100.0% 91.2%
2qkdA02 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.59 49.0 3.72e-01 90.2% 53.6%
1irxA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 41.0 3.72e-01 82.0% 67.7%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.54 48.0 4.13e-01 100.0% 69.5%
2e1mA05 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.51 43.0 3.78e-01 95.1% 79.1%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945115 10.12.1.8 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.74 58.0 4.22e-01 85.2% 60.6%
3596950 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.71 60.0 4.08e-01 91.8% 77.6%
4225307 10.12.1.104 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding, Cupin_2 0.71 57.0 4.17e-01 88.5% 62.4%
3942711 10.12.1.104 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding, Cupin_2 0.70 56.0 4.21e-01 88.5% 65.8%
4264722 10.12.1.8 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.70 56.0 4.09e-01 88.5% 60.6%
3890229 603.1.1.64 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › CUPID 0.70 49.0 4.24e-01 73.8% 69.5%
4316810 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.69 55.0 4.16e-01 86.9% 66.2%
3627163 197.1.1.0 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like 0.69 53.0 4.13e-01 80.3% 64.8%
4378922 10.12.1.104 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding, Cupin_2 0.69 55.0 4.06e-01 88.5% 61.3%
3956896 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.69 60.0 4.66e-01 96.7% 66.9%
4978047 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.67 47.0 3.01e-01 73.8% 31.5%
3229540 197.1.1.0 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like 0.67 51.0 4.53e-01 80.3% 91.8%
3605488 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.65 51.0 4.90e-01 85.2% 100.0%
None — 0.64 55.0 3.38e-01 96.7% 55.8%
4569385 377.1.1.2 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S14 0.62 54.0 4.59e-01 100.0% 60.2%
3839989 7022.1.1.1 ↗ alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › MBOAT 0.61 44.0 3.18e-01 77.0% 81.1%
3220832 592.7.1.1 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 0.56 40.0 3.57e-01 77.0% 100.0%