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NC_041971.1__YP_009605087.1__FDH96_gp097__00097

Bact-Vir

NC_041971.1__YP_009605087.1__FDH96_gp097__00097

Identity

Accession:
NC_041971 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-76
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.72 65.0 5.19e-01 100.0% 58.5%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.70 63.0 4.81e-01 100.0% 50.0%
2gvhC01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 51.0 4.16e-01 85.3% 79.4%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 48.0 4.31e-01 81.3% 80.6%
1ayrB02 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 56.0 4.26e-01 100.0% 81.4%
3e7jA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 47.0 3.08e-01 81.3% 46.9%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.61 54.0 4.20e-01 100.0% 61.8%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.61 52.0 4.41e-01 100.0% 76.3%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.61 45.0 3.72e-01 97.3% 43.7%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.61 53.0 4.18e-01 100.0% 65.0%
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.60 50.0 4.32e-01 94.7% 80.8%
4uqfA02 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.60 45.0 3.77e-01 81.3% 73.9%
4jf8A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.60 52.0 4.22e-01 97.3% 83.3%
3exzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 47.0 3.79e-01 85.3% 93.9%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.60 49.0 3.84e-01 92.0% 67.5%
1q6wG00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 46.0 3.67e-01 84.0% 94.0%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.59 45.0 3.81e-01 97.3% 50.0%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.58 52.0 4.22e-01 100.0% 84.7%
1lshA03 2.20.50.20 Mainly Beta › Single Sheet › Outer Surface Protein A; domain 2 › Lipovitellin. Chain A, domain 3 0.58 48.0 4.44e-01 97.3% 70.4%
1ut7B01 2.170.150.80 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain 0.58 42.0 3.57e-01 81.3% 46.4%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.58 41.0 3.25e-01 74.7% 37.8%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 50.0 4.35e-01 100.0% 94.2%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 49.0 4.17e-01 100.0% 91.6%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.57 41.0 3.96e-01 85.3% 66.7%
4bj8K00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.57 42.0 3.64e-01 85.3% 49.2%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 50.0 4.10e-01 100.0% 73.9%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.57 49.0 4.12e-01 100.0% 91.9%
3ejvA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 48.0 3.91e-01 100.0% 88.7%
1ex0A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 3.88e-01 85.3% 81.6%
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 47.0 4.00e-01 98.7% 81.6%
3f7xA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 47.0 4.02e-01 100.0% 86.5%
3cu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 48.0 3.81e-01 100.0% 74.1%
1b1eA00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.55 47.0 4.08e-01 100.0% 91.9%
4cvuA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 3.88e-01 90.7% 82.4%
2pn5A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.76e-01 78.7% 83.7%
6b6lA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.78e-01 85.3% 87.2%
4o3vA00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.54 47.0 3.91e-01 100.0% 89.1%
4ibnA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 46.0 3.45e-01 94.7% 89.4%
2ns9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 48.0 3.82e-01 98.7% 62.8%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.54 35.0 3.70e-01 93.3% 76.9%
2ww8A02 2.60.40.2110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 45.0 3.43e-01 98.7% 74.2%
7uclA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 42.0 3.76e-01 97.3% 61.8%
4b0bB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 45.0 3.59e-01 100.0% 91.7%
1sq4A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 39.0 3.32e-01 80.0% 81.7%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 45.0 3.92e-01 100.0% 84.6%
3uezC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.86e-01 82.7% 80.7%
6hswA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 39.0 2.51e-01 84.0% 42.4%
5cyxA02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 37.0 3.23e-01 77.3% 72.0%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 43.0 3.88e-01 100.0% 91.7%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3938575 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.70 48.0 4.28e-01 77.3% 50.5%
3301984 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.68 47.0 5.34e-01 81.3% 98.2%
4017880 3385.1.1.0 beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.64 49.0 3.98e-01 81.3% 45.7%
5017300 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.64 50.0 4.31e-01 85.3% 55.8%
2491331 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.64 58.0 4.44e-01 100.0% 51.2%
3647427 10.1.1.11 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.63 46.0 3.81e-01 76.0% 60.0%
4943914 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.63 51.0 3.35e-01 86.7% 35.5%
4652688 504.1.1.1 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB 0.63 50.0 4.10e-01 86.7% 50.7%
3576754 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.63 47.0 4.09e-01 78.7% 53.6%
3961375 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.62 47.0 3.43e-01 100.0% 29.0%
5029145 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 52.0 4.90e-01 90.7% 85.6%
3637890 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 50.0 3.65e-01 88.0% 66.8%
4992962 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.61 48.0 4.13e-01 85.3% 86.7%
3219500 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.61 50.0 3.28e-01 89.3% 20.9%
3610122 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 42.0 4.02e-01 73.3% 96.7%
3818687 243.1.1.49 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 0.60 53.0 4.33e-01 100.0% 80.0%
4981268 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.60 48.0 3.30e-01 86.7% 26.5%
5058953 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 50.0 4.07e-01 90.7% 77.9%
5056410 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.60 47.0 3.12e-01 85.3% 32.1%
3698353 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 51.0 4.42e-01 100.0% 92.8%
3189243 3385.1.1.0 beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.59 51.0 4.29e-01 100.0% 67.4%
5042875 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 45.0 4.12e-01 84.0% 84.5%
135591 265.1.1.4 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › PhiCb5_coat 0.59 45.0 3.81e-01 97.3% 50.0%
4987319 1036.1.1.2 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › PF29994 0.59 45.0 3.94e-01 84.0% 55.5%
3999331 11.1.1.41 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.58 51.0 4.39e-01 100.0% 97.6%
3706841 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 46.0 4.07e-01 86.7% 86.4%
3176441 11.1.1.41 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.58 49.0 3.64e-01 94.7% 72.0%
3604122 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.58 45.0 2.97e-01 85.3% 38.2%
4097801 3518.1.1.0 a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex 0.58 51.0 3.97e-01 100.0% 85.5%
4199388 504.1.1.1 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB 0.57 44.0 3.64e-01 85.3% 54.5%
3212364 5.1.5.27 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › APEH_N 0.57 50.0 3.11e-01 100.0% 30.0%
3994341 6165.1.1.1 beta sandwiches › Piezo CTL2 domain › Piezo CTL2 domain › Piezo CTL2 domain › Piezo_RRas_bdg 0.56 48.0 3.52e-01 100.0% 93.0%
3927397 6165.1.1.1 beta sandwiches › Piezo CTL2 domain › Piezo CTL2 domain › Piezo CTL2 domain › Piezo_RRas_bdg 0.56 47.0 3.41e-01 100.0% 93.6%
5044042 11.1.1.410 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › BatD 0.56 45.0 4.30e-01 89.3% 94.4%
4173092 222.2.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Insertion domain in thioesterase › Insertion domain in thioesterase › FAS1_thioest_ins 0.55 48.0 4.38e-01 100.0% 91.4%
3967619 244.3.1.6 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › TSCPD 0.55 46.0 3.98e-01 93.3% 90.8%
3396171 6165.1.1.1 beta sandwiches › Piezo CTL2 domain › Piezo CTL2 domain › Piezo CTL2 domain › Piezo_RRas_bdg 0.55 47.0 3.46e-01 100.0% 54.5%
3408954 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 3.25e-01 92.0% 57.8%
3823244 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.55 47.0 3.97e-01 100.0% 63.7%
1168678 5084.5.1.4 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.55 37.0 4.17e-01 70.7% 94.8%
3666444 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.55 46.0 3.59e-01 100.0% 48.1%
3991835 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.54 48.0 3.94e-01 97.3% 86.7%
3440523 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.54 46.0 3.38e-01 100.0% 57.8%
5029482 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.54 40.0 3.95e-01 100.0% 73.8%
223631 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.54 46.0 3.34e-01 94.7% 81.0%
4801855 5.1.4.10 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_1 0.54 45.0 2.87e-01 96.0% 22.5%
3823073 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.53 46.0 2.97e-01 96.0% 20.6%
3201205 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.53 41.0 2.79e-01 85.3% 28.9%
3796083 221.1.2.0 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.53 41.0 3.45e-01 84.0% 52.3%
3214004 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 45.0 4.17e-01 100.0% 93.0%
3280539 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.52 44.0 3.79e-01 100.0% 90.0%
4660860 2484.1.1.222 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UPF0236 0.52 40.0 2.76e-01 90.7% 23.3%
4080326 243.1.1.76 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 0.51 44.0 3.89e-01 100.0% 85.8%
4162701 243.1.1.76 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 0.51 43.0 3.82e-01 100.0% 85.8%
3404065 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.51 39.0 3.89e-01 85.3% 77.5%