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NC_041976.1__YP_009606450.1__FDI01_gp023__00023

Bact-Vir

NC_041976.1__YP_009606450.1__FDI01_gp023__00023

Identity

Accession:
NC_041976 ↗
Kingdom:
phage

Quality

85.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-184
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27000.1 best PH_gly_zipper 44.9 1.20e-11 74.5% 81.8%
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.88 50.0 6.67e-01 82.8% 100.0%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.86 57.0 6.91e-01 97.9% 99.0%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.84 48.0 6.29e-01 94.5% 97.7%
1qqgA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.82 57.0 6.73e-01 97.2% 99.0%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.82 57.0 6.39e-01 96.6% 88.8%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.79 55.0 5.93e-01 96.6% 82.3%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.79 56.0 6.15e-01 97.9% 86.8%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.78 49.0 6.09e-01 100.0% 98.9%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.76 57.0 6.32e-01 100.0% 94.9%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.76 59.0 6.37e-01 100.0% 93.5%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.76 62.0 6.53e-01 97.9% 93.9%
2rovA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 59.0 6.53e-01 96.6% 100.0%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 51.0 6.08e-01 95.9% 100.0%
4ioyX02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 47.0 5.28e-01 93.8% 80.0%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 53.0 6.09e-01 94.5% 98.1%
1v89A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 55.0 6.03e-01 99.3% 94.1%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 52.0 6.08e-01 97.2% 99.1%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 53.0 5.88e-01 97.9% 93.9%
1dynA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 52.0 5.87e-01 94.5% 94.7%
7z6eA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 58.0 6.34e-01 97.2% 100.0%
4gn1C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 52.0 5.15e-01 99.3% 70.7%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 55.0 5.89e-01 97.9% 90.6%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 58.0 6.20e-01 95.9% 99.2%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.67 55.0 5.60e-01 100.0% 87.9%
3so6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 58.0 6.01e-01 97.9% 95.6%
2m38A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 59.0 6.13e-01 96.6% 98.5%
1foeC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 55.0 5.35e-01 93.8% 80.1%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 52.0 5.63e-01 97.9% 100.0%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.63 53.0 5.59e-01 94.5% 94.8%
4ifsA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.62 52.0 5.51e-01 94.5% 96.2%
3d8dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 56.0 5.80e-01 97.9% 100.0%
2kuqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 52.0 5.12e-01 99.3% 87.6%
7pupA01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 40.0 3.55e-01 84.1% 91.6%
ECOD (95)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3389668 220.1.1.160 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.87 55.0 6.69e-01 97.9% 93.0%
4964695 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.86 60.0 6.50e-01 96.6% 82.4%
3547186 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.86 49.0 5.34e-01 98.6% 66.4%
4674129 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.85 57.0 6.72e-01 97.9% 95.2%
3481680 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.84 59.0 6.65e-01 97.9% 90.4%
3288866 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.83 51.0 5.65e-01 95.9% 75.0%
3520079 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.82 58.0 6.55e-01 96.6% 91.3%
3493400 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.82 54.0 6.39e-01 97.9% 93.3%
5007104 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.81 58.0 6.80e-01 94.5% 100.0%
4018795 220.1.1.43 beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.81 58.0 6.31e-01 97.2% 85.5%
4960280 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.81 46.0 5.67e-01 93.1% 86.3%
3273237 220.1.1.26 beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II 0.81 55.0 5.93e-01 97.2% 80.0%
3251857 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.81 55.0 5.76e-01 97.2% 74.8%
3872511 220.1.1.192 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP_C 0.81 57.0 5.82e-01 97.2% 74.3%
3571773 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.80 58.0 6.27e-01 97.9% 85.6%
4938399 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.80 57.0 6.52e-01 93.1% 95.5%
4949986 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.80 58.0 6.68e-01 98.6% 99.1%
5065350 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.80 63.0 6.95e-01 97.2% 100.0%
4927614 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.79 56.0 6.45e-01 100.0% 96.4%
3707284 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.78 58.0 6.36e-01 99.3% 91.7%
4026754 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.78 62.0 6.41e-01 97.2% 87.4%
3770806 220.1.1.119 beta barrels › PH domain-like › PH domain-like › PH domain-like › Syntrophin_4th 0.77 51.0 5.63e-01 98.6% 82.2%
5081087 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 56.0 6.38e-01 93.8% 98.2%
3389061 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 59.0 6.45e-01 98.6% 95.8%
3601898 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 64.0 6.15e-01 100.0% 78.2%
3949336 220.1.1.216 beta barrels › PH domain-like › PH domain-like › PH domain-like › Helicase_IV_N 0.76 51.0 5.84e-01 98.6% 90.9%
3633078 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.75 58.0 6.22e-01 95.9% 91.2%
3936607 220.1.1.68 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_Tiam1 0.75 65.0 6.24e-01 99.3% 81.2%
3389089 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.75 60.0 6.61e-01 99.3% 99.2%
3607882 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 54.0 6.13e-01 97.9% 96.4%
168216 220.1.1.151 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MRCK 0.75 59.0 6.53e-01 96.6% 100.0%
4018401 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.75 61.0 6.48e-01 100.0% 95.4%
3271309 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.75 54.0 5.81e-01 98.6% 85.6%
3289995 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 46.0 5.28e-01 93.8% 81.8%
3201410 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 58.0 5.85e-01 97.2% 80.0%
5002795 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 60.0 6.57e-01 95.9% 100.0%
3705577 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.75 47.0 4.70e-01 94.5% 60.7%
3778135 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.75 55.0 5.49e-01 99.3% 73.3%
3255028 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.74 57.0 5.42e-01 97.9% 68.2%
3828493 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 58.0 5.81e-01 97.2% 79.7%
3598219 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 60.0 6.45e-01 100.0% 99.2%
3928361 220.1.1.46 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.73 62.0 6.36e-01 96.6% 92.1%
3849627 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.73 58.0 6.07e-01 99.3% 88.9%
5016314 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.73 58.0 5.78e-01 95.9% 80.7%
3582577 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 62.0 6.59e-01 92.4% 100.0%
3869553 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.72 57.0 5.96e-01 97.9% 88.1%
4027836 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.72 56.0 5.59e-01 100.0% 78.0%
3269834 220.1.1.95 beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_PH 0.71 53.0 5.67e-01 98.6% 88.0%
3788985 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 60.0 6.06e-01 99.3% 89.0%
3925367 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 54.0 5.33e-01 99.3% 75.3%
4932562 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 51.0 5.64e-01 95.9% 92.2%
3619357 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.71 59.0 5.77e-01 94.5% 80.6%
3475430 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 58.0 5.57e-01 100.0% 76.9%
3717734 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 55.0 5.92e-01 95.9% 95.2%
3743110 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.69 48.0 5.60e-01 93.8% 97.1%
3531333 220.1.1.35 beta barrels › PH domain-like › PH domain-like › PH domain-like › IQ_SEC7_PH 0.69 55.0 5.21e-01 97.9% 71.5%
3236855 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.69 54.0 5.41e-01 99.3% 78.7%
3994778 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 55.0 5.61e-01 100.0% 86.3%
3485880 220.1.1.165 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_trem 0.69 57.0 6.08e-01 96.6% 96.9%
3493894 220.1.1.165 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_trem 0.69 56.0 5.97e-01 94.5% 94.6%
3522591 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.68 53.0 4.09e-01 97.2% 38.7%
3486620 220.1.1.165 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_trem 0.68 57.0 6.16e-01 95.9% 100.0%
3231960 192.5.1.0 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.68 52.0 4.54e-01 99.3% 55.1%
3595953 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 61.0 5.60e-01 95.2% 77.8%
3730739 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.68 53.0 5.60e-01 95.2% 88.7%
3564452 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.67 53.0 3.12e-01 97.9% 11.9%
3479598 220.1.1.165 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_trem 0.67 58.0 5.92e-01 98.6% 92.9%
4424238 220.1.1.127 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_GEF_YEL1 0.67 57.0 5.58e-01 100.0% 82.6%
4024877 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 58.0 5.83e-01 94.5% 90.3%
3480560 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 56.0 5.67e-01 97.2% 87.6%
3709115 220.1.1.175 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_31 0.67 63.0 5.39e-01 100.0% 72.0%
3898197 220.1.1.192 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP_C 0.67 58.0 5.82e-01 97.2% 89.7%
3883155 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.66 59.0 5.82e-01 98.6% 89.3%
4977715 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 50.0 5.60e-01 100.0% 99.1%
3493625 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 58.0 5.97e-01 99.3% 96.4%
4025081 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 56.0 5.58e-01 99.3% 86.7%
3492377 220.1.1.18 beta barrels › PH domain-like › PH domain-like › PH domain-like › PTB 0.65 58.0 5.88e-01 93.8% 94.5%
3493167 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 57.0 5.69e-01 97.9% 89.3%
4522783 101.1.2.715 alpha arrays › HTH › HTH › winged helix domain › CheF-arch 0.65 61.0 4.79e-01 99.3% 65.7%
3177039 220.1.1.127 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_GEF_YEL1 0.64 61.0 5.49e-01 100.0% 86.8%
3772274 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.64 57.0 5.56e-01 99.3% 85.0%
3401792 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.63 59.0 5.96e-01 100.0% 97.2%
3745926 220.1.1.23 beta barrels › PH domain-like › PH domain-like › PH domain-like › ICAP-1_inte_bdg 0.63 59.0 5.77e-01 98.6% 91.6%
4016859 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.63 54.0 5.48e-01 97.2% 90.3%
3228052 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.63 58.0 5.51e-01 97.2% 90.0%
3527300 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.63 59.0 5.52e-01 97.9% 86.5%
4656099 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.62 59.0 5.53e-01 100.0% 87.1%
3784644 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 58.0 4.61e-01 100.0% 64.4%
3491283 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.61 55.0 5.23e-01 100.0% 83.0%
3723171 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 57.0 5.66e-01 100.0% 94.7%
4535557 220.1.1.192 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP_C 0.61 58.0 5.25e-01 98.6% 81.0%
4539117 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.60 52.0 5.15e-01 100.0% 86.7%
3833943 220.1.1.128 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SPT16 0.59 54.0 5.01e-01 97.2% 85.1%
3784673 220.1.1.190 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26660 0.58 52.0 5.02e-01 97.2% 90.9%
3181799 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.51 39.0 3.69e-01 80.0% 78.2%