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NC_041976.1__YP_009606462.1__FDI01_gp035__00035
Bact-VirNC_041976.1__YP_009606462.1__FDI01_gp035__00035
Identity
- Accession:
- NC_041976 ↗
- Kingdom:
- phage
Quality
83.8
mean pLDDT
Taxonomy
TaxID: 1296658
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-36
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gfaA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.68 | 49.0 | 3.08e-01 | 77.8% | 59.2% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.68 | 51.0 | 4.13e-01 | 86.1% | 53.3% |
| 4ga4A01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.64 | 51.0 | 4.39e-01 | 100.0% | 71.6% |
| 3g2eB00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.63 | 50.0 | 3.28e-01 | 100.0% | 25.9% |
| 1gkuB08 | 1.10.290.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 | 0.55 | 45.0 | 3.24e-01 | 100.0% | 78.2% |
| 2gsqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 44.0 | 3.29e-01 | 97.2% | 70.4% |
| 1fi4A02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.53 | 39.0 | 2.65e-01 | 97.2% | 19.2% |
| 6k4yI00 | 1.10.1810.10 | Mainly Alpha › Orthogonal Bundle › Anti-sigma factor AsiA › Anti-Sigma Factor A | 0.51 | 44.0 | 3.36e-01 | 100.0% | 59.1% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3875375 | 192.7.1.36 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › PF28673 | 0.73 | 49.0 | 3.19e-01 | 75.0% | 16.7% |
| 4491822 | 312.1.1.5 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › GalP_UDP_tr_C | 0.71 | 60.0 | 3.71e-01 | 100.0% | 25.2% |
| 3515207 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.67 | 50.0 | 3.92e-01 | 88.9% | 100.0% |
| 3956499 | 101.1.11.42 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › ParD_like | 0.66 | 52.0 | 4.18e-01 | 100.0% | 45.9% |
| 3587013 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.64 | 51.0 | 4.49e-01 | 100.0% | 60.0% |
| 3958092 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 49.0 | 3.28e-01 | 97.2% | 20.0% |
| 4957894 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 54.0 | 3.86e-01 | 100.0% | 41.9% |
| 5040128 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.58 | 46.0 | 2.88e-01 | 100.0% | 30.2% |