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NC_041976.1__YP_009606478.1__FDI01_gp051__00051

Bact-Vir

NC_041976.1__YP_009606478.1__FDI01_gp051__00051

Identity

Accession:
NC_041976 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-191
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2g30A02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.70 37.0 4.25e-01 95.6% 68.1%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.68 38.0 4.10e-01 95.6% 62.4%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.63 44.0 4.99e-01 94.4% 92.7%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.62 47.0 5.03e-01 95.0% 90.0%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 29.0 3.20e-01 82.5% 53.1%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 39.0 3.97e-01 96.2% 67.1%
3q63F00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 41.0 4.45e-01 98.1% 83.5%
4esqA00 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.58 52.0 4.93e-01 97.5% 97.9%
3l5zA01 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.58 42.0 4.61e-01 75.0% 98.5%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 41.0 4.48e-01 96.2% 87.9%
1g1bA00 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.58 43.0 4.26e-01 76.2% 73.8%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 39.0 4.36e-01 98.1% 89.8%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.56 49.0 4.84e-01 93.8% 89.4%
7cu8E01 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.56 49.0 4.68e-01 93.8% 100.0%
1xszA03 3.30.310.140 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › sec7 domains 0.55 38.0 3.88e-01 98.1% 70.7%
2ns9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 42.0 4.42e-01 98.1% 87.2%
8es5A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 39.0 4.19e-01 96.2% 84.1%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 38.0 4.13e-01 98.1% 84.3%
3oh8A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 39.0 4.18e-01 98.1% 85.7%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 41.0 4.24e-01 98.1% 86.3%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.54 45.0 4.68e-01 92.5% 96.0%
3blcA00 2.70.98.90 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 40.0 3.31e-01 78.1% 60.4%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 39.0 3.62e-01 76.9% 78.3%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 39.0 4.15e-01 96.2% 88.8%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.52 43.0 4.57e-01 98.1% 98.6%
1nrfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 38.0 3.34e-01 78.1% 100.0%
4gc8B00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.51 35.0 3.41e-01 100.0% 63.8%
3ddvB01 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.50 39.0 4.17e-01 80.0% 100.0%
1xkzC00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 39.0 3.34e-01 80.0% 98.4%
2olvA03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 43.0 3.44e-01 92.5% 89.2%
2wqlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 39.0 4.08e-01 98.1% 86.8%
2yfoA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 25.0 3.19e-01 76.2% 79.2%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4935741 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.72 48.0 5.59e-01 93.1% 93.9%
3951048 331.4.1.17 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › ResB 0.72 42.0 4.80e-01 95.6% 76.7%
3875277 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.72 35.0 4.14e-01 95.6% 65.2%
5069097 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.71 41.0 4.64e-01 96.9% 74.2%
3931614 331.9.1.2 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.69 36.0 4.13e-01 95.0% 67.8%
5062234 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.67 39.0 4.45e-01 98.1% 75.8%
5043799 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.67 40.0 4.58e-01 98.1% 79.7%
4954483 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.63 47.0 5.32e-01 93.8% 98.4%
1286181 881.1.1.7 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3805 0.62 47.0 5.09e-01 93.8% 93.4%
3955158 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.62 49.0 5.33e-01 96.2% 99.3%
5051779 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.62 39.0 4.67e-01 97.5% 93.6%
4929322 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.60 35.0 4.27e-01 95.6% 90.0%
4999715 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.60 36.0 4.00e-01 94.4% 74.4%
4965080 881.1.1.44 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF6517 0.60 53.0 4.78e-01 93.1% 100.0%
3410192 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.59 43.0 4.59e-01 98.8% 85.7%
4953412 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.59 44.0 4.90e-01 96.2% 97.6%
3702663 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.59 47.0 4.95e-01 93.8% 92.4%
3972141 881.1.1.25 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF4946 0.58 50.0 5.16e-01 91.3% 98.7%
5014159 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.58 41.0 4.55e-01 98.8% 91.2%
3856140 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.58 42.0 4.49e-01 99.4% 85.0%
185719 881.1.1.8 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C 0.58 52.0 4.93e-01 97.5% 97.9%
3278559 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.58 51.0 5.08e-01 95.0% 97.1%
3273857 331.9.1.2 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.58 36.0 3.90e-01 95.6% 72.5%
6331 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.58 41.0 4.47e-01 96.2% 87.2%
4987012 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.58 48.0 4.97e-01 93.8% 93.3%
3961987 881.1.1.8 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C 0.57 51.0 4.82e-01 96.9% 99.5%
3281834 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 47.0 5.00e-01 95.0% 97.9%
4659121 814.1.1.2 a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › Chor_lyase 0.57 43.0 4.11e-01 76.9% 82.1%
3599881 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 48.0 5.06e-01 93.1% 97.9%
5047219 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.57 39.0 4.10e-01 96.2% 75.3%
4153471 814.1.1.2 a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › Chor_lyase 0.57 42.0 4.11e-01 76.2% 81.1%
4373881 814.1.1.2 a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › Chor_lyase 0.57 42.0 4.18e-01 76.9% 81.2%
2841931 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.57 40.0 4.21e-01 96.2% 79.3%
4188473 814.1.1.2 a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › Chor_lyase 0.57 42.0 4.17e-01 76.9% 83.5%
4069356 814.1.1.2 a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › Chor_lyase 0.57 42.0 4.13e-01 76.9% 83.4%
3973908 881.1.1.25 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF4946 0.56 49.0 4.97e-01 91.9% 100.0%
3784456 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.56 41.0 4.40e-01 98.8% 86.4%
5030147 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.56 46.0 4.88e-01 92.5% 95.9%
3599013 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 37.0 3.73e-01 79.4% 66.3%
3713199 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.56 50.0 4.46e-01 94.4% 97.2%
4165804 223.3.1.3 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.55 39.0 3.35e-01 71.9% 100.0%
3952435 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.55 50.0 4.83e-01 96.2% 98.9%
2771892 881.1.1.8 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C 0.55 50.0 4.71e-01 98.1% 98.4%
3829111 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.55 48.0 4.41e-01 94.4% 88.1%
4289286 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.55 41.0 4.31e-01 99.4% 83.3%
4059480 881.1.1.37 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF27270 0.55 48.0 4.71e-01 93.1% 89.1%
4952370 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.55 46.0 4.73e-01 93.1% 92.3%
3279138 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.55 41.0 4.35e-01 98.8% 88.6%
3324335 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.54 48.0 4.78e-01 95.6% 97.1%
3716605 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 49.0 4.91e-01 96.9% 100.0%
3805100 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.54 48.0 4.53e-01 94.4% 95.7%
4928129 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.54 41.0 4.36e-01 98.1% 88.3%
177767 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 39.0 4.18e-01 98.1% 87.3%
3700352 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 48.0 4.51e-01 96.9% 89.0%
3597442 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 41.0 4.02e-01 78.1% 99.4%
3278459 881.1.1.33 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF26056 0.54 48.0 4.62e-01 96.2% 91.6%
3269422 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 45.0 3.79e-01 94.4% 53.3%
3591533 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 47.0 4.64e-01 94.4% 92.9%
4954301 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 45.0 4.71e-01 93.8% 97.3%
4951451 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 43.0 4.54e-01 93.1% 95.9%
3714612 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 46.0 4.60e-01 93.1% 95.2%
5077539 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 38.0 4.36e-01 90.0% 100.0%
3295586 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.52 45.0 4.53e-01 93.1% 97.0%
3395729 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 44.0 4.45e-01 96.2% 89.4%
3291389 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 45.0 4.56e-01 97.5% 98.1%
5016233 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 33.0 3.99e-01 90.0% 98.1%
4926836 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 38.0 4.28e-01 89.4% 100.0%
4572271 223.3.1.3 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.50 38.0 3.32e-01 78.8% 100.0%