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NC_041976.1__YP_009606520.1__FDI01_gp093__00093

Bact-Vir

NC_041976.1__YP_009606520.1__FDI01_gp093__00093

Identity

Accession:
NC_041976 ↗
Kingdom:
phage

Quality

90.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-59
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 62.0 6.32e-01 91.1% 100.0%
2k3aA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.73 62.0 5.15e-01 96.4% 58.0%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 61.0 5.56e-01 92.9% 89.2%
4wsiA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 53.0 5.06e-01 78.6% 100.0%
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 49.0 4.98e-01 73.2% 75.0%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 55.0 5.86e-01 94.6% 100.0%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 60.0 6.04e-01 96.4% 98.2%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 62.0 5.99e-01 98.2% 90.3%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 58.0 5.62e-01 98.2% 82.5%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 55.0 4.50e-01 91.1% 51.0%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 55.0 5.17e-01 94.6% 88.6%
1t0hA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 55.0 4.61e-01 92.9% 80.2%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 54.0 5.19e-01 92.9% 95.3%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 54.0 4.23e-01 100.0% 61.9%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 5.19e-01 94.6% 86.7%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 50.0 3.82e-01 85.7% 64.2%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 53.0 4.87e-01 92.9% 85.1%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 52.0 5.20e-01 91.1% 98.3%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 51.0 5.09e-01 89.3% 100.0%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.63 54.0 4.94e-01 98.2% 71.4%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 51.0 4.70e-01 92.9% 80.0%
1vx7N01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 51.0 4.54e-01 94.6% 62.4%
1zsqA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 51.0 4.38e-01 100.0% 80.2%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.61 47.0 3.49e-01 87.5% 71.7%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 47.0 3.06e-01 92.9% 48.7%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.59 48.0 3.65e-01 94.6% 85.8%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.59 48.0 3.37e-01 100.0% 82.7%
3tu3B01 3.30.720.80 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.58 47.0 4.42e-01 100.0% 72.4%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 44.0 4.18e-01 94.6% 78.7%
3pu2B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 45.0 3.39e-01 91.1% 58.2%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.57 42.0 3.82e-01 87.5% 57.5%
1xn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 40.0 3.13e-01 76.8% 31.2%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 43.0 2.73e-01 87.5% 44.0%
3qeeB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 49.0 3.11e-01 100.0% 36.1%
4hn7A00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 42.0 3.72e-01 82.1% 94.1%
3h0gH00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 40.0 3.30e-01 82.1% 45.2%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.55 44.0 3.97e-01 98.2% 98.9%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 44.0 3.49e-01 98.2% 91.5%
2hesX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 42.0 2.72e-01 87.5% 26.0%
4g56D00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 41.0 2.65e-01 83.9% 40.6%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 44.0 2.84e-01 96.4% 30.9%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 39.0 3.88e-01 82.1% 72.1%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.54 43.0 3.42e-01 100.0% 57.3%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.54 42.0 2.79e-01 96.4% 81.1%
1b9mB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 39.0 3.68e-01 80.4% 77.8%
3syjA02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.53 38.0 2.23e-01 82.1% 11.0%
3wewA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 40.0 2.80e-01 91.1% 60.5%
1nr0A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 40.0 2.60e-01 87.5% 35.6%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.52 42.0 2.79e-01 100.0% 43.8%
6igbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.67e-01 100.0% 27.8%
1vwxH02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 38.0 3.24e-01 83.9% 87.4%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.51 40.0 3.12e-01 94.6% 48.4%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.70e-01 87.5% 84.5%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 41.0 2.66e-01 100.0% 53.6%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.50 41.0 2.78e-01 100.0% 98.4%
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 40.0 3.02e-01 100.0% 78.9%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995678 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 68.0 6.89e-01 92.9% 92.7%
4348606 4.1.1.440 beta barrels › SH3 › SH3 › SH3 › PF27165 0.78 68.0 6.47e-01 96.4% 84.6%
3411858 4.1.1.456 beta barrels › SH3 › SH3 › SH3 › BAH, BAHCC1-like_Tudor, SH3_TNRC18 0.76 65.0 3.87e-01 96.4% 13.1%
3910727 4.1.1.353 beta barrels › SH3 › SH3 › SH3 › SH3_TNRC18 0.76 65.0 6.22e-01 96.4% 86.2%
2426920 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.74 63.0 6.40e-01 96.4% 96.4%
3245045 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.72 63.0 4.23e-01 98.2% 27.0%
3264809 4.1.1.251 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5 0.72 58.0 5.91e-01 94.6% 90.9%
3475756 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 61.0 5.47e-01 92.9% 80.0%
3251940 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.71 63.0 5.65e-01 96.4% 74.7%
3693741 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 61.0 5.64e-01 92.9% 94.2%
4665407 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.70 53.0 5.53e-01 96.4% 92.0%
3486326 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 59.0 5.97e-01 96.4% 94.5%
4024913 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 59.0 5.62e-01 100.0% 81.5%
3463181 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 56.0 5.24e-01 96.4% 71.4%
2394466 4.8.1.29 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SH3_AEBP2_C 0.70 50.0 4.36e-01 76.8% 59.3%
3395948 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.69 58.0 5.93e-01 96.4% 94.5%
3347851 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 54.0 5.10e-01 96.4% 70.0%
4594253 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 51.0 4.77e-01 80.4% 97.1%
3465976 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 56.0 5.38e-01 96.4% 78.5%
3894023 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 57.0 4.96e-01 92.9% 98.8%
3931417 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 55.0 5.45e-01 91.1% 100.0%
3401559 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 58.0 5.56e-01 96.4% 93.8%
3214234 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 55.0 5.41e-01 89.3% 95.0%
3328489 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 54.0 5.05e-01 91.1% 71.4%
3810217 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 54.0 5.64e-01 91.1% 100.0%
3302817 4.1.1.362 beta barrels › SH3 › SH3 › SH3 › KOW6_SPT51-2, KOW7_SPT5 0.67 56.0 4.47e-01 96.4% 47.7%
3826459 5.1.5.96 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 0.67 55.0 3.61e-01 96.4% 34.0%
3374228 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 57.0 5.58e-01 96.4% 98.3%
3684646 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 55.0 4.89e-01 96.4% 65.0%
5036498 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.66 55.0 5.03e-01 96.4% 70.7%
3467678 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 54.0 4.38e-01 96.4% 47.3%
3469279 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 54.0 4.94e-01 96.4% 69.3%
3707347 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 56.0 5.64e-01 98.2% 96.4%
3512419 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 54.0 4.73e-01 92.9% 71.8%
4000403 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.66 52.0 5.44e-01 96.4% 100.0%
3526953 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 54.0 5.23e-01 94.6% 96.8%
3821920 4.1.1.283 beta barrels › SH3 › SH3 › SH3 › KOW6_SPT51-2 0.65 55.0 5.54e-01 96.4% 96.4%
3236896 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 54.0 5.02e-01 92.9% 87.1%
4295947 3844.1.1.1 a+b two layers › hydrogenase expression protein-like › hydrogenase expression protein-like › hydrogenase expression protein › HupH_C 0.65 54.0 4.47e-01 98.2% 50.9%
3580985 220.1.1.162 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF31014 0.65 54.0 3.93e-01 100.0% 64.6%
3471771 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 54.0 5.48e-01 96.4% 96.4%
3620948 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 54.0 4.09e-01 100.0% 61.7%
3573828 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 53.0 4.47e-01 94.6% 91.0%
2561577 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.64 57.0 5.56e-01 100.0% 96.7%
3581719 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 55.0 4.45e-01 100.0% 60.0%
531 4.1.1.281 beta barrels › SH3 › SH3 › SH3 › SH3_KALRN 0.64 53.0 4.87e-01 92.9% 85.1%
3296864 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.64 56.0 5.50e-01 100.0% 96.7%
3171604 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 52.0 4.80e-01 92.9% 90.7%
3295296 4.8.1.7 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SAWADEE 0.64 44.0 4.76e-01 73.2% 95.6%
3401355 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 54.0 4.52e-01 100.0% 68.3%
3170649 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 54.0 4.73e-01 96.4% 89.4%
4589583 2008.1.1.191 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_HpaII 0.63 50.0 3.70e-01 94.6% 90.8%
3598271 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 52.0 3.76e-01 96.4% 31.2%
3995669 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 51.0 3.41e-01 92.9% 28.6%
3777241 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.20e-01 96.4% 48.2%
3378830 220.1.1.153 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TRF2_HOY1 0.61 49.0 3.85e-01 100.0% 80.0%
3891252 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 48.0 4.78e-01 91.1% 98.3%
3317929 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 53.0 4.41e-01 100.0% 72.0%
3425789 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.59 47.0 3.02e-01 92.9% 27.8%
3492787 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.59 46.0 3.38e-01 94.6% 29.0%
4945471 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 48.0 4.65e-01 96.4% 93.8%
2409445 5.1.2.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.59 47.0 3.02e-01 92.9% 84.9%
3322461 4.1.1.94 beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.58 44.0 4.36e-01 87.5% 98.3%
3312743 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.56 40.0 3.01e-01 76.8% 78.7%
4015597 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.56 47.0 3.88e-01 98.2% 76.4%
3251307 5.1.4.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.54 45.0 2.81e-01 100.0% 31.3%
3251953 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 37.0 3.91e-01 76.8% 95.6%
3620138 3246.1.1.4 few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAMTS_CR_3 0.54 39.0 3.29e-01 78.6% 53.0%
3553623 719.1.1.2 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.53 42.0 3.50e-01 100.0% 65.6%
3796352 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 43.0 4.21e-01 96.4% 86.2%
3767960 719.1.1.2 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.53 42.0 3.47e-01 100.0% 63.2%
3902278 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.52 42.0 2.70e-01 100.0% 28.6%
4847379 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 40.0 2.67e-01 94.6% 32.3%
3817530 5.1.3.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.50 41.0 2.79e-01 100.0% 46.3%