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NC_041976.1__YP_009606521.1__FDI01_gp094__00094

Bact-Vir

NC_041976.1__YP_009606521.1__FDI01_gp094__00094

Identity

Accession:
NC_041976 ↗
Kingdom:
phage

Quality

79.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jimmervirus› Brevibacillus_phage_Jimmer2

TaxID: 1296658

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-110
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 50.0 5.54e-01 100.0% 90.9%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 48.0 5.29e-01 97.6% 89.4%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 41.0 4.97e-01 89.2% 100.0%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 46.0 5.15e-01 92.8% 93.5%
2mk5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 53.0 4.57e-01 85.5% 74.8%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 46.0 4.24e-01 72.3% 76.6%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 43.0 5.02e-01 72.3% 94.8%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 43.0 5.11e-01 90.4% 100.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 4.97e-01 98.8% 79.5%
1r77A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 54.0 5.13e-01 92.8% 100.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.58e-01 98.8% 87.9%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.70e-01 100.0% 81.4%
3hk0B02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 48.0 4.20e-01 92.8% 78.1%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 43.0 3.72e-01 78.3% 81.3%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 41.0 3.68e-01 100.0% 51.2%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.55 45.0 4.41e-01 98.8% 81.7%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 38.0 4.25e-01 92.8% 100.0%
4a0tA03 2.60.320.30 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.52 40.0 3.96e-01 100.0% 77.8%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 43.0 4.11e-01 100.0% 79.2%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.51 40.0 3.45e-01 90.4% 78.1%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4953913 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.69 47.0 5.34e-01 97.6% 96.7%
3175310 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 52.0 3.92e-01 79.5% 42.6%
3507639 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.67 50.0 5.36e-01 100.0% 92.9%
858452 4.1.1.476 ↗ beta barrels › SH3 › SH3 › SH3 › PF30873 0.67 47.0 4.50e-01 98.8% 63.5%
5034351 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 42.0 5.04e-01 92.8% 100.0%
185635 4.1.1.391 ↗ beta barrels › SH3 › SH3 › SH3 › FDF, PF30873 0.65 46.0 4.03e-01 97.6% 50.4%
4031509 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 44.0 4.89e-01 97.6% 98.3%
3936130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 49.0 4.73e-01 98.8% 71.6%
3173156 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.64 48.0 4.93e-01 98.8% 82.5%
3704305 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.64 49.0 5.27e-01 100.0% 97.1%
3574742 4.1.1.47 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin6 0.64 50.0 4.86e-01 100.0% 76.7%
3225056 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 46.0 4.29e-01 78.3% 72.7%
4481026 4.1.1.407 ↗ beta barrels › SH3 › SH3 › SH3 › PF29661 0.64 42.0 4.82e-01 77.1% 95.0%
3220403 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 44.0 4.09e-01 72.3% 75.2%
3624163 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 49.0 4.81e-01 100.0% 76.7%
3598125 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.81e-01 97.6% 85.3%
3625817 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.62 48.0 4.91e-01 100.0% 85.0%
3907190 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.61 47.0 4.53e-01 98.8% 71.6%
3272363 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.61 47.0 4.52e-01 98.8% 72.6%
1102642 3750.1.1.1 ↗ beta sandwiches › Surface cell antigen (sca) N-terminal domain › Surface cell antigen (sca) N-terminal domain › Surface cell antigen (sca) N-terminal domain › 120_Rick_ant 0.60 48.0 3.29e-01 86.7% 54.9%
157624 4.1.1.47 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin6 0.60 47.0 4.70e-01 100.0% 81.4%
3927305 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 43.0 3.97e-01 75.9% 88.2%
3389662 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.60 46.0 4.72e-01 95.2% 85.0%
3786412 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.59 49.0 5.00e-01 98.8% 92.5%
3458058 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.59 48.0 4.21e-01 89.2% 70.4%
3934133 1.1.1.19 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.54 40.0 3.65e-01 84.3% 59.1%
5011498 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 40.0 3.94e-01 100.0% 73.0%
3595320 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 3.54e-01 92.8% 90.9%
3945528 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 38.0 3.85e-01 100.0% 78.8%
3279782 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.52 35.0 3.09e-01 97.6% 47.5%
5051988 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 38.0 3.37e-01 80.7% 56.7%