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NC_041976.1__YP_009606522.1__FDI01_gp095__00095
Bact-VirNC_041976.1__YP_009606522.1__FDI01_gp095__00095
Identity
- Accession:
- NC_041976 ↗
- Kingdom:
- phage
Quality
91.7
mean pLDDT
Taxonomy
TaxID: 1296658
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-97
Domain cluster:
rep: OQ921347.1__WIT28107.1__X__00183__D4-71
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vz8A04 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.61 | 48.0 | 3.43e-01 | 85.4% | 83.9% |
| 1b24A01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.57 | 49.0 | 4.73e-01 | 97.6% | 94.7% |
| 4nmlA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 41.0 | 4.02e-01 | 76.8% | 93.3% |
| 2b30A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.56 | 43.0 | 3.94e-01 | 84.1% | 95.4% |
| 1rkqA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.55 | 41.0 | 3.83e-01 | 80.5% | 95.3% |
| 3mpoA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.55 | 41.0 | 3.78e-01 | 80.5% | 95.3% |
| 2jugA01 | 1.10.10.1830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Non-ribosomal peptide synthase, adenylation domain | 0.54 | 34.0 | 3.92e-01 | 100.0% | 96.4% |
| 1wu7A02 | 3.30.240.30 | Alpha Beta › 2-Layer Sandwich › CRO Repressor › | 0.54 | 35.0 | 4.18e-01 | 73.2% | 100.0% |
| 2o8bB04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.54 | 37.0 | 3.26e-01 | 89.0% | 45.0% |
| 3znuA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.54 | 37.0 | 3.58e-01 | 72.0% | 68.1% |
| 3ipjA01 | 3.30.1360.60 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Glucose permease domain IIB | 0.53 | 44.0 | 4.43e-01 | 95.1% | 95.0% |
| 6vbkA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.53 | 45.0 | 4.08e-01 | 93.9% | 82.0% |
| 4dw8A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.52 | 41.0 | 3.85e-01 | 87.8% | 98.1% |
| 1s7hA02 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 36.0 | 3.69e-01 | 73.2% | 78.0% |
| 5mmjh01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.52 | 41.0 | 4.32e-01 | 90.2% | 93.3% |
| 4on1A01 | 2.40.128.470 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 38.0 | 3.24e-01 | 78.0% | 46.0% |
| 2v4jB01 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 37.0 | 3.22e-01 | 75.6% | 50.0% |
| 3nftA00 | 1.20.1710.10 | Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like | 0.52 | 41.0 | 2.94e-01 | 87.8% | 95.4% |
| 5ep9D00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.51 | 43.0 | 3.13e-01 | 95.1% | 69.0% |
| 3ba3B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 41.0 | 3.49e-01 | 90.2% | 79.0% |
| 4oc9A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 42.0 | 3.67e-01 | 95.1% | 85.4% |
| 3n5mB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 39.0 | 3.11e-01 | 84.1% | 48.3% |
| 4mchA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.51 | 37.0 | 2.73e-01 | 79.3% | 93.8% |
| 2fokA03 | 3.40.91.30 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.51 | 41.0 | 3.26e-01 | 90.2% | 89.7% |
| 1d0xA04 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.50 | 41.0 | 3.54e-01 | 92.7% | 67.2% |
| 3etbL00 | 2.60.40.810 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 43.0 | 3.65e-01 | 97.6% | 87.4% |
| 1osyA00 | 2.60.40.1790 | Mainly Beta › Sandwich › Immunoglobulin-like › Fungal immunomodulatory protein Fve | 0.50 | 38.0 | 3.53e-01 | 85.4% | 63.2% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5051925 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.63 | 55.0 | 5.01e-01 | 98.8% | 83.6% |
| 3602220 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.63 | 54.0 | 5.35e-01 | 96.3% | 98.8% |
| 4210423 | 313.1.1.1 ↗ | a+b complex topology › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › MurB_C | 0.62 | 45.0 | 3.64e-01 | 76.8% | 69.4% |
| 3290652 | 306.2.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor | 0.61 | 52.0 | 5.14e-01 | 98.8% | 98.9% |
| 4566109 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.60 | 52.0 | 5.02e-01 | 100.0% | 100.0% |
| 4975970 | 242.4.1.0 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain | 0.60 | 52.0 | 4.81e-01 | 97.6% | 86.7% |
| 4937999 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.60 | 52.0 | 5.10e-01 | 100.0% | 92.2% |
| 4941230 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.59 | 52.0 | 4.71e-01 | 100.0% | 71.3% |
| 4221596 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.59 | 51.0 | 4.62e-01 | 98.8% | 85.2% |
| 4979624 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.59 | 50.0 | 4.59e-01 | 97.6% | 84.5% |
| 3177415 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.58 | 51.0 | 4.68e-01 | 100.0% | 84.5% |
| 3720283 | 3012.1.1.8 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Ned1_M | 0.58 | 43.0 | 4.03e-01 | 78.0% | 76.0% |
| 4153241 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.58 | 49.0 | 4.64e-01 | 98.8% | 89.5% |
| 4574941 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.58 | 50.0 | 4.60e-01 | 98.8% | 83.6% |
| 3704761 | 101.1.9.90 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › NOL10_2nd | 0.58 | 34.0 | 4.05e-01 | 70.7% | 94.0% |
| 3632125 | 3012.1.1.8 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Ned1_M | 0.58 | 42.0 | 4.05e-01 | 78.0% | 80.0% |
| 3595010 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 44.0 | 4.14e-01 | 82.9% | 92.0% |
| 4126441 | 320.2.1.1 ↗ | a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 | 0.57 | 40.0 | 4.47e-01 | 75.6% | 100.0% |
| 3784546 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.57 | 46.0 | 4.55e-01 | 89.0% | 98.8% |
| 4659154 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.56 | 47.0 | 3.96e-01 | 97.6% | 65.8% |
| 4937024 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.56 | 49.0 | 4.77e-01 | 98.8% | 92.2% |
| 5030462 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.56 | 49.0 | 4.60e-01 | 100.0% | 89.5% |
| 4027329 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 42.0 | 3.68e-01 | 84.1% | 100.0% |
| 4268233 | 3016.1.1.19 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › KYNU_C | 0.54 | 43.0 | 2.83e-01 | 91.5% | 96.2% |
| 5041224 | 306.2.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor | 0.54 | 47.0 | 4.69e-01 | 98.8% | 100.0% |
| 5036198 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 37.0 | 3.96e-01 | 72.0% | 88.6% |
| 4981852 | 2006.1.1.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 | 0.54 | 40.0 | 2.90e-01 | 80.5% | 28.3% |
| 4984880 | 2006.1.1.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 | 0.54 | 39.0 | 2.84e-01 | 80.5% | 27.4% |
| 4942705 | 2006.1.1.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 | 0.53 | 39.0 | 2.85e-01 | 84.1% | 26.9% |
| 5078454 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 38.0 | 4.00e-01 | 90.2% | 91.4% |
| 3739487 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 36.0 | 3.62e-01 | 72.0% | 71.8% |
| 3214527 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.53 | 42.0 | 3.71e-01 | 89.0% | 80.8% |
| 3916304 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.52 | 39.0 | 3.79e-01 | 81.7% | 72.2% |
| 3608730 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.52 | 36.0 | 2.48e-01 | 87.8% | 18.5% |
| 139834 | 4132.1.1.1 ↗ | alpha bundles › IpaD-like › IpaD-like › IpaD-like › T3SS_TC | 0.52 | 41.0 | 2.93e-01 | 87.8% | 95.4% |
| 3802135 | 192.29.1.27 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF1218 | 0.52 | 42.0 | 3.40e-01 | 91.5% | 89.1% |
| 4980789 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.52 | 35.0 | 2.29e-01 | 70.7% | 25.3% |
| 4026004 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 44.0 | 4.03e-01 | 100.0% | 95.7% |
| 5046913 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.50 | 41.0 | 3.86e-01 | 91.5% | 85.4% |
| 3716320 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.50 | 39.0 | 3.52e-01 | 89.0% | 93.6% |