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NC_041978.1__YP_009606740.1__FDI03_gp072__00072

Bact-Vir

NC_041978.1__YP_009606740.1__FDI03_gp072__00072

Identity

Accession:
NC_041978 ↗
Kingdom:
phage

Quality

85.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Andersonviridae› Kolesnikvirus› Erwinia_phage_vB_Eam-MM7

TaxID: 1051674

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-87
PDB
Domain cluster: rep: OQ079410.1__WCD55429.1__LABOLPEG_00027__00027__D6-77
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.76 52.0 5.41e-01 72.2% 100.0%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 55.0 5.83e-01 90.3% 89.1%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 56.0 5.65e-01 80.6% 94.4%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.72 51.0 4.49e-01 75.0% 82.9%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.71 55.0 5.68e-01 83.3% 91.3%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 53.0 5.43e-01 80.6% 95.7%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 51.0 5.03e-01 76.4% 85.5%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.70 56.0 4.96e-01 84.7% 88.9%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.68 53.0 4.20e-01 84.7% 49.0%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 53.0 5.25e-01 84.7% 87.0%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 49.0 4.44e-01 80.6% 58.4%
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 50.0 4.39e-01 81.9% 59.4%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 48.0 4.17e-01 81.9% 53.9%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.63 50.0 5.13e-01 86.1% 100.0%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 44.0 3.24e-01 77.8% 79.4%
2hlcA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 46.0 3.85e-01 80.6% 65.1%
4lk4A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 46.0 3.87e-01 84.7% 64.0%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 44.0 4.32e-01 79.2% 100.0%
2pnlA00 3.30.230.110 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.59 45.0 3.34e-01 84.7% 70.9%
2m9uA00 2.30.30.850 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.41e-01 88.9% 93.3%
4rdlA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.57 44.0 3.92e-01 84.7% 98.1%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.57 43.0 3.99e-01 83.3% 100.0%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 44.0 3.22e-01 84.7% 34.3%
4rlzA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.56 44.0 3.85e-01 86.1% 99.1%
3lq6A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.56 43.0 3.75e-01 84.7% 98.2%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 41.0 3.37e-01 83.3% 48.0%
4g1vA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 41.0 3.60e-01 87.5% 77.1%
1xhnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 40.0 3.15e-01 84.7% 47.0%
2p1gA02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.52 39.0 3.57e-01 83.3% 80.0%
1mvpA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 39.0 3.39e-01 80.6% 68.8%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 39.0 3.55e-01 84.7% 70.0%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.51 41.0 3.06e-01 90.3% 87.6%
3gwyB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 37.0 3.15e-01 81.9% 79.7%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3504834 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 57.0 6.28e-01 77.8% 98.3%
3516333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 54.0 6.04e-01 86.1% 96.4%
3511551 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 58.0 6.27e-01 80.6% 100.0%
3520654 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.76 59.0 4.60e-01 83.3% 70.0%
3937299 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 53.0 4.92e-01 73.6% 66.7%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.75 60.0 5.95e-01 86.1% 96.0%
3268160 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 57.0 5.32e-01 81.9% 91.1%
3416068 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.75 59.0 4.49e-01 83.3% 71.6%
3924375 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.74 62.0 6.15e-01 88.9% 93.3%
3928136 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 54.0 5.87e-01 76.4% 100.0%
3689576 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 58.0 4.55e-01 86.1% 67.7%
3494683 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 58.0 5.91e-01 84.7% 94.3%
3933539 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 56.0 5.86e-01 81.9% 100.0%
3854638 4.1.1.131 ↗ beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.73 55.0 4.86e-01 86.1% 57.0%
3188712 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.72 57.0 5.08e-01 84.7% 91.0%
3650798 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 58.0 4.96e-01 87.5% 98.3%
3925589 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 52.0 5.30e-01 76.4% 100.0%
3934192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 52.0 5.65e-01 76.4% 100.0%
4063634 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.71 55.0 4.58e-01 83.3% 61.3%
3922426 4.1.1.363 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet, Tudor_FRX1 0.71 60.0 5.07e-01 95.8% 55.8%
3927795 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 51.0 5.52e-01 75.0% 100.0%
4319097 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 49.0 5.41e-01 81.9% 91.4%
3619619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 60.0 6.12e-01 94.4% 95.7%
3665882 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 60.0 4.80e-01 91.7% 88.1%
4987744 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.70 61.0 4.93e-01 95.8% 60.7%
3517651 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 55.0 5.46e-01 84.7% 93.3%
2756510 4.1.1.131 ↗ beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.70 54.0 5.00e-01 88.9% 66.3%
3841414 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 58.0 5.95e-01 94.4% 94.3%
3933892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 49.0 5.29e-01 73.6% 100.0%
3554026 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.69 54.0 5.80e-01 84.7% 100.0%
5061293 219.1.1.77 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF3335 0.69 52.0 3.70e-01 80.6% 38.1%
3275615 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 63.0 5.12e-01 100.0% 96.9%
3938908 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 55.0 5.56e-01 86.1% 88.6%
3514556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 58.0 5.95e-01 97.2% 97.1%
4283343 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 52.0 5.08e-01 84.7% 97.5%
3575581 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.67 57.0 4.35e-01 94.4% 80.0%
2755606 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.67 57.0 3.98e-01 94.4% 56.5%
3368864 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 55.0 5.75e-01 91.7% 100.0%
3940362 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 54.0 3.76e-01 88.9% 28.8%
3930643 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 51.0 5.52e-01 86.1% 100.0%
None — 0.66 49.0 3.51e-01 80.6% 28.6%
3930366 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 51.0 5.55e-01 83.3% 100.0%
3459099 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.65 57.0 5.06e-01 97.2% 99.0%
3500448 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 51.0 5.30e-01 84.7% 96.9%
3935101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 52.0 5.51e-01 87.5% 98.5%
3615787 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.65 49.0 3.45e-01 80.6% 28.4%
4251101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 51.0 4.89e-01 86.1% 91.8%
3244773 1.1.5.49 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.65 49.0 3.32e-01 80.6% 24.6%
None — 0.65 49.0 3.47e-01 80.6% 28.8%
4367301 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 45.0 5.00e-01 72.2% 96.4%
3432441 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 46.0 3.16e-01 76.4% 42.0%
4998219 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 51.0 4.40e-01 87.5% 93.0%
4140958 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 50.0 4.93e-01 86.1% 97.3%
5052232 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.62 44.0 2.82e-01 75.0% 39.1%
3537236 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 42.0 3.50e-01 70.8% 83.8%
4572937 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.62 54.0 4.12e-01 97.2% 58.8%
1503651 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 53.0 5.11e-01 94.4% 87.5%
4271087 4.1.1.444 ↗ beta barrels › SH3 › SH3 › SH3 › SplA 0.61 47.0 4.78e-01 86.1% 88.6%
4210485 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.61 49.0 5.11e-01 87.5% 96.9%
3810482 1.1.7.46 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B 0.61 51.0 4.14e-01 91.7% 78.5%
3719783 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.40e-01 86.1% 91.5%
4625654 4.1.1.445 ↗ beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.60 47.0 4.68e-01 86.1% 90.7%
3744112 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.59 44.0 3.93e-01 81.9% 96.4%
3805726 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 46.0 3.81e-01 81.9% 99.2%
3247934 1.1.7.41 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.59 45.0 4.13e-01 81.9% 98.9%
3615287 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 45.0 4.04e-01 86.1% 77.1%
3601993 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.57 45.0 3.33e-01 86.1% 31.3%
3611892 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.57 45.0 3.34e-01 86.1% 32.1%
3719164 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 44.0 3.33e-01 86.1% 32.1%
3212847 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 43.0 3.21e-01 88.9% 30.2%
4492958 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 42.0 3.81e-01 86.1% 100.0%
3632407 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 3.75e-01 88.9% 84.6%
4181458 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.54 41.0 3.68e-01 84.7% 95.5%
4085589 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.54 41.0 4.01e-01 83.3% 100.0%
4429352 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 44.0 4.08e-01 88.9% 88.9%
3 1.1.1.3 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP 0.52 39.0 3.36e-01 80.6% 69.6%
3817275 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.50 34.0 3.00e-01 72.2% 92.4%