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NC_041978.1__YP_009606759.1__FDI03_gp091__00091
Bact-VirNC_041978.1__YP_009606759.1__FDI03_gp091__00091
Identity
- Accession:
- NC_041978 ↗
- Kingdom:
- phage
Quality
88.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Andersonviridae›
Kolesnikvirus›
Erwinia_phage_vB_Eam-MM7
TaxID: 1051674
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 74-188
Domain cluster:
rep: MW749006.1__QXN70452.1__AGENTSMITH_46__00046__D4-99
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14216.13 best | DUF4326 | 68.1 | 1.20e-18 | 82.6% | 90.6% |
D2
medium
residues 1-69
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4yhbA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.61 | 50.0 | 4.14e-01 | 92.8% | 93.8% |
| 1vwxA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 49.0 | 4.74e-01 | 91.3% | 100.0% |
| 2jwpA00 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.60 | 48.0 | 3.71e-01 | 91.3% | 100.0% |
| 4bi3A01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.58 | 47.0 | 4.33e-01 | 89.9% | 75.8% |
| 3t2lA01 | 2.60.40.2620 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like | 0.58 | 43.0 | 3.59e-01 | 82.6% | 61.1% |
| 3b21A00 | 3.90.70.140 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.57 | 49.0 | 3.63e-01 | 100.0% | 53.6% |
| 4gouA02 | 2.30.29.200 | Mainly Beta › Roll › PH-domain like › | 0.56 | 40.0 | 3.16e-01 | 76.8% | 58.9% |
| 2dmoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 41.0 | 4.17e-01 | 78.3% | 88.2% |
| 3pe0A03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 38.0 | 3.96e-01 | 75.4% | 95.3% |
| 3kyfA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.54 | 37.0 | 3.16e-01 | 72.5% | 53.0% |
| 1s7iA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.53 | 39.0 | 3.35e-01 | 82.6% | 96.0% |
| 1bf2A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 40.0 | 3.49e-01 | 88.4% | 64.0% |
| 2ebfX01 | 3.10.670.10 | Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. | 0.51 | 38.0 | 2.95e-01 | 88.4% | 83.9% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3398379 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.67 | 49.0 | 4.08e-01 | 76.8% | 74.2% |
| 3876167 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.63 | 44.0 | 3.35e-01 | 75.4% | 50.9% |
| 3472609 | 220.1.1.35 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › IQ_SEC7_PH | 0.61 | 42.0 | 3.22e-01 | 72.5% | 60.6% |
| 1177249 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.59 | 42.0 | 3.60e-01 | 75.4% | 75.4% |
| 3988859 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.56 | 43.0 | 3.77e-01 | 84.1% | 78.1% |
| 3248409 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.56 | 42.0 | 3.38e-01 | 84.1% | 68.3% |
| 4932728 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 44.0 | 3.77e-01 | 89.9% | 83.5% |
| 3572393 | 4.1.1.99 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_10 | 0.55 | 43.0 | 4.33e-01 | 88.4% | 100.0% |
| 3893368 | 4.1.1.99 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_10 | 0.54 | 41.0 | 4.20e-01 | 82.6% | 100.0% |
| 3565621 | 10.32.1.234 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PGAP1_3rd | 0.54 | 45.0 | 3.53e-01 | 98.6% | 68.5% |
| 3425128 | 868.1.1.0 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related | 0.54 | 40.0 | 3.08e-01 | 84.1% | 48.9% |
| 3902139 | 4.1.1.99 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_10 | 0.52 | 40.0 | 4.03e-01 | 87.0% | 100.0% |
| 3538424 | 633.23.1.3 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › L_HMGIC_fpl | 0.52 | 39.0 | 2.83e-01 | 84.1% | 74.0% |
| 3620924 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.51 | 38.0 | 3.68e-01 | 84.1% | 97.6% |
| 3921751 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.51 | 40.0 | 3.22e-01 | 89.9% | 84.7% |
| 3478889 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.50 | 41.0 | 3.25e-01 | 95.7% | 55.0% |