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NC_041978.1__YP_009606780.1__FDI03_gp112__00112
Bact-VirNC_041978.1__YP_009606780.1__FDI03_gp112__00112
Identity
- Accession:
- NC_041978 ↗
- Kingdom:
- phage
Quality
56.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Andersonviridae›
Kolesnikvirus›
Erwinia_phage_vB_Eam-MM7
TaxID: 1051674
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 49-107
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1w36C06 | 1.10.10.990 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.70 | 59.0 | 5.61e-01 | 96.6% | 80.6% |
| 1uujA00 | 1.20.960.30 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › | 0.69 | 51.0 | 4.67e-01 | 94.9% | 60.5% |
| 1iqpA03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.69 | 54.0 | 4.70e-01 | 93.2% | 55.3% |
| 1x4oA00 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.69 | 60.0 | 5.54e-01 | 100.0% | 76.9% |
| 3beyD00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.68 | 51.0 | 4.46e-01 | 91.5% | 52.1% |
| 2b8iA00 | 1.20.1280.100 | Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain | 0.67 | 54.0 | 5.07e-01 | 94.9% | 77.9% |
| 3r2kA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.65 | 50.0 | 3.71e-01 | 84.7% | 77.3% |
| 5hayA02 | 1.25.40.440 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain | 0.64 | 45.0 | 4.15e-01 | 74.6% | 55.7% |
| 3ff5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 46.0 | 4.71e-01 | 84.7% | 85.2% |
| 2dt7B01 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.64 | 53.0 | 5.31e-01 | 94.9% | 94.9% |
| 4malA00 | 1.20.58.2200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 46.0 | 4.64e-01 | 84.7% | 78.0% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.63 | 51.0 | 4.30e-01 | 91.5% | 80.4% |
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.61 | 49.0 | 4.16e-01 | 93.2% | 52.5% |
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.61 | 49.0 | 4.20e-01 | 93.2% | 84.5% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.61 | 44.0 | 3.51e-01 | 76.3% | 78.0% |
| 3h3mA00 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.60 | 49.0 | 4.38e-01 | 93.2% | 83.1% |
| 3b40A02 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.59 | 41.0 | 4.20e-01 | 91.5% | 74.1% |
| 7z7vE01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.59 | 43.0 | 4.33e-01 | 84.7% | 81.7% |
| 3fvvA02 | 1.20.1440.100 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function | 0.59 | 42.0 | 4.00e-01 | 79.7% | 84.0% |
| 6d2qA02 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.58 | 47.0 | 4.01e-01 | 96.6% | 52.9% |
| 1z9eA00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.58 | 44.0 | 4.05e-01 | 86.4% | 66.3% |
| 1vw4L01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.58 | 46.0 | 3.76e-01 | 98.3% | 56.3% |
| 2p4vA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.57 | 39.0 | 3.68e-01 | 72.9% | 56.6% |
| 4bwrA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 44.0 | 2.68e-01 | 91.5% | 11.8% |
| 2j16A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.56 | 47.0 | 3.78e-01 | 100.0% | 62.4% |
| 2p58C00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 45.0 | 3.68e-01 | 89.8% | 60.7% |
| 2r31A02 | 1.10.3580.10 | Mainly Alpha › Orthogonal Bundle › ATP12-like fold › ATP12 ATPase | 0.56 | 41.0 | 3.04e-01 | 81.4% | 33.5% |
| 2lsoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 44.0 | 4.10e-01 | 100.0% | 68.7% |
| 2yukA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.55 | 40.0 | 3.53e-01 | 79.7% | 57.8% |
| 2gomA00 | 1.10.10.1270 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV | 0.55 | 39.0 | 3.95e-01 | 84.7% | 78.7% |
| 3waeA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 43.0 | 3.24e-01 | 89.8% | 35.8% |
| 4uhcA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 47.0 | 3.09e-01 | 100.0% | 29.9% |
| 2ixnA02 | 1.20.120.1150 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Phosphotyrosyl phosphate activator, C-terminal lid domain | 0.54 | 41.0 | 3.51e-01 | 88.1% | 79.4% |
| 1y8aA02 | 1.10.3870.10 | Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily | 0.54 | 41.0 | 3.34e-01 | 84.7% | 51.7% |
| 1zvwA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.53 | 39.0 | 3.89e-01 | 91.5% | 77.3% |
| 1ac1A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 45.0 | 3.20e-01 | 100.0% | 41.5% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3741114 | 223.2.1.29 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 | 0.79 | 68.0 | 4.88e-01 | 93.2% | 91.3% |
| 4179237 | 6028.1.1.0 ↗ | alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor | 0.78 | 67.0 | 6.47e-01 | 94.9% | 86.2% |
| 3217488 | 558.1.1.3 ↗ | alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › CSTF1_dimer | 0.76 | 52.0 | 5.06e-01 | 94.9% | 64.6% |
| 4473504 | 304.136.1.3 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SGIII | 0.76 | 62.0 | 5.41e-01 | 91.5% | 60.0% |
| 4944387 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.75 | 65.0 | 5.35e-01 | 98.3% | 54.3% |
| 3708001 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.69 | 53.0 | 5.11e-01 | 89.8% | 74.3% |
| 3339002 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.67 | 53.0 | 4.98e-01 | 93.2% | 69.3% |
| 3449714 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.67 | 56.0 | 3.31e-01 | 96.6% | 56.1% |
| 3526831 | 558.1.1.21 ↗ | alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › BRWD1_N | 0.66 | 54.0 | 4.96e-01 | 93.2% | 81.2% |
| 3702188 | 4168.1.1.0 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain | 0.65 | 49.0 | 5.03e-01 | 84.7% | 87.3% |
| 3894985 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.64 | 49.0 | 4.12e-01 | 93.2% | 47.3% |
| 5075274 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.62 | 49.0 | 3.65e-01 | 89.8% | 40.0% |
| 3672635 | 101.1.1.295 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 | 0.61 | 49.0 | 4.65e-01 | 96.6% | 78.7% |
| 3569081 | 558.1.1.32 ↗ | alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › SACK1 | 0.61 | 47.0 | 4.54e-01 | 100.0% | 72.1% |
| 4183706 | 2002.1.1.41 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase | 0.61 | 46.0 | 2.92e-01 | 86.4% | 14.9% |
| 4940997 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.60 | 53.0 | 4.28e-01 | 100.0% | 74.8% |
| 3899877 | 109.4.1.451 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Iml2-TPR_39 | 0.60 | 47.0 | 3.03e-01 | 91.5% | 36.7% |
| 4583551 | 185.1.1.1 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl | 0.60 | 51.0 | 4.45e-01 | 100.0% | 80.0% |
| 3878853 | 4044.1.1.13 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › BicD | 0.59 | 39.0 | 3.50e-01 | 74.6% | 48.2% |
| 5053839 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 48.0 | 4.52e-01 | 93.2% | 92.0% |
| 3607327 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 49.0 | 4.89e-01 | 98.3% | 96.7% |
| 3635912 | 109.4.1.268 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › LARP1_HEAT | 0.59 | 46.0 | 3.50e-01 | 93.2% | 33.8% |
| 4236485 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.58 | 46.0 | 3.82e-01 | 94.9% | 45.8% |
| 4025908 | 109.7.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E | 0.58 | 48.0 | 4.64e-01 | 96.6% | 94.3% |
| None | — | 0.56 | 47.0 | 4.50e-01 | 94.9% | 82.9% | |
| 4491240 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.56 | 46.0 | 4.64e-01 | 89.8% | 96.7% |
| 4037022 | 604.15.1.1 ↗ | alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like › efb-c | 0.56 | 41.0 | 4.19e-01 | 86.4% | 89.1% |
| 3566375 | 558.1.1.2 ↗ | alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › FOP_dimer | 0.56 | 47.0 | 4.47e-01 | 94.9% | 82.9% |
| 4012881 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 45.0 | 3.63e-01 | 94.9% | 44.8% |
| 5033360 | 101.1.1.131 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Arch_fla_DE | 0.55 | 43.0 | 3.96e-01 | 100.0% | 64.7% |