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NC_041978.1__YP_009606781.1__FDI03_gp113__00113

Bact-Vir

NC_041978.1__YP_009606781.1__FDI03_gp113__00113

Identity

Accession:
NC_041978 ↗
Kingdom:
phage

Quality

89.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-80
PDB
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 59.0 6.25e-01 75.3% 81.5%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 58.0 5.61e-01 71.2% 66.3%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 56.0 4.92e-01 75.3% 53.3%
4izzB02 1.10.10.1680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain 0.75 51.0 5.29e-01 78.1% 75.0%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 52.0 5.53e-01 72.6% 85.7%
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 50.0 5.09e-01 71.2% 73.6%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 46.0 4.98e-01 75.3% 77.4%
2w48B01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 48.0 5.56e-01 79.5% 98.1%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 45.0 4.84e-01 76.7% 74.6%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 45.0 5.35e-01 79.5% 98.0%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 44.0 4.80e-01 75.3% 78.7%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 47.0 4.86e-01 75.3% 76.1%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 45.0 4.27e-01 75.3% 57.6%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 5.46e-01 75.3% 100.0%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 50.0 3.94e-01 78.1% 65.3%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 4.93e-01 74.0% 97.1%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.67 47.0 3.26e-01 86.3% 21.1%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 44.0 4.96e-01 79.5% 90.7%
2jrtA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 4.48e-01 82.2% 62.8%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.67 48.0 4.43e-01 75.3% 62.8%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.67 48.0 3.97e-01 75.3% 67.5%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 46.0 4.26e-01 72.6% 57.4%
2gloA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 47.0 5.09e-01 78.1% 100.0%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 46.0 4.13e-01 79.5% 55.3%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 45.0 4.19e-01 79.5% 59.6%
2pmiB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 53.0 3.84e-01 94.5% 61.5%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.97e-01 78.1% 100.0%
5tjjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 44.0 4.43e-01 74.0% 93.2%
2fa5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 3.41e-01 71.2% 51.1%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 47.0 4.32e-01 83.6% 87.6%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 3.38e-01 75.3% 74.2%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 4.14e-01 79.5% 70.5%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 4.10e-01 83.6% 74.0%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 3.71e-01 86.3% 64.1%
3f2gA00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 50.0 3.67e-01 98.6% 78.0%
4rgxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 3.93e-01 91.8% 62.7%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 3.65e-01 82.2% 72.2%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 48.0 3.88e-01 95.9% 66.4%
2a61B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 47.0 3.92e-01 98.6% 67.9%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 3.77e-01 87.7% 70.0%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 49.0 3.94e-01 98.6% 68.8%
2y75A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.46e-01 82.2% 60.8%
4kibA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.72e-01 83.6% 69.7%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4303963 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.86 60.0 6.00e-01 72.6% 72.0%
3955987 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.85 60.0 5.40e-01 74.0% 55.8%
4945127 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 69.0 6.56e-01 86.3% 76.5%
3452698 101.1.10.37 alpha arrays › HTH › HTH › Cyclin-like › PF26138 0.83 61.0 5.53e-01 82.2% 58.9%
3452676 101.1.1.267 alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.83 64.0 5.79e-01 86.3% 62.1%
3305070 101.1.1.267 alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.81 59.0 5.76e-01 86.3% 70.9%
3279339 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.80 56.0 4.10e-01 72.6% 29.2%
4244028 101.1.1.107 alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.80 56.0 6.13e-01 72.6% 88.3%
3663639 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.79 56.0 4.21e-01 74.0% 34.9%
4944726 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 53.0 5.83e-01 71.2% 88.3%
3944370 101.1.1.318 alpha arrays › HTH › HTH › Three-helical HTH › PF30335 0.77 52.0 5.36e-01 76.7% 72.9%
3459967 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.77 62.0 5.24e-01 86.3% 61.9%
3919175 101.1.1.129 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.77 60.0 5.17e-01 82.2% 70.0%
3913655 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.77 61.0 5.96e-01 84.9% 77.5%
3670113 101.1.1.129 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.76 55.0 5.18e-01 76.7% 71.1%
3983783 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.76 64.0 5.86e-01 91.8% 73.7%
3880943 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 58.0 5.30e-01 84.9% 63.2%
3455559 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 55.0 5.07e-01 78.1% 61.1%
3907483 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 61.0 5.29e-01 90.4% 59.1%
3916395 101.1.1.129 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.74 59.0 5.20e-01 94.5% 59.0%
3908710 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 56.0 5.14e-01 80.8% 63.2%
3886097 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 56.0 5.56e-01 80.8% 78.7%
4349614 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.73 51.0 5.71e-01 76.7% 96.4%
3401087 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.72 48.0 5.52e-01 71.2% 98.0%
4529157 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.72 51.0 4.78e-01 74.0% 62.2%
4604979 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.72 53.0 4.65e-01 76.7% 53.8%
3939238 101.1.1.52 alpha arrays › HTH › HTH › Three-helical HTH › BrkDBD 0.72 48.0 4.55e-01 71.2% 56.7%
4533441 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.72 52.0 4.72e-01 75.3% 58.9%
3985633 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.72 50.0 5.62e-01 78.1% 98.2%
4197050 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.72 52.0 4.60e-01 76.7% 56.2%
3905610 2484.1.1.120 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 0.71 64.0 4.08e-01 100.0% 47.8%
4148347 101.1.1.26 alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.71 53.0 4.71e-01 79.5% 57.7%
4347676 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.71 51.0 4.76e-01 75.3% 62.2%
4106860 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.71 50.0 4.63e-01 75.3% 60.0%
3090474 4020.1.1.0 a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.70 62.0 4.99e-01 97.3% 90.6%
5056682 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 50.0 5.11e-01 76.7% 78.6%
5047331 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 44.0 4.12e-01 75.3% 52.2%
4998375 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 45.0 4.29e-01 79.5% 56.5%
3970884 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.69 50.0 4.56e-01 75.3% 63.2%
4002185 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.69 48.0 4.82e-01 74.0% 70.7%
5072420 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 46.0 5.33e-01 79.5% 100.0%
3191582 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.69 51.0 4.31e-01 84.9% 45.4%
3404418 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.69 49.0 4.99e-01 76.7% 78.6%
4626289 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.69 46.0 4.80e-01 72.6% 76.9%
4281674 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.69 49.0 4.36e-01 75.3% 57.1%
3650286 101.1.2.454 alpha arrays › HTH › HTH › winged helix domain › FAM91_N 0.68 42.0 4.95e-01 72.6% 92.0%
3953807 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.68 53.0 4.12e-01 89.0% 37.6%
3986350 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.68 45.0 5.14e-01 71.2% 100.0%
4174590 101.1.2.61 alpha arrays › HTH › HTH › winged helix domain › Sigma70_r4 0.68 49.0 5.19e-01 76.7% 89.2%
3998880 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 51.0 4.73e-01 87.7% 64.2%
4606821 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.67 48.0 4.38e-01 76.7% 62.0%
3989117 101.1.1.129 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.67 51.0 4.64e-01 83.6% 64.0%
3793383 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.66 47.0 4.98e-01 78.1% 84.6%
3873677 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.65 47.0 4.79e-01 78.1% 80.0%
3986553 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.65 52.0 4.81e-01 93.2% 77.0%
3166394 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.64 51.0 4.64e-01 86.3% 93.0%
4142269 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.62 40.0 4.48e-01 72.6% 87.3%
3602631 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.60 41.0 4.07e-01 71.2% 76.2%
4458965 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.59 48.0 4.64e-01 87.7% 96.2%