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NC_041978.1__YP_009606783.1__FDI03_gp115__00115

Bact-Vir

NC_041978.1__YP_009606783.1__FDI03_gp115__00115

Identity

Accession:
NC_041978 ↗
Kingdom:
phage

Quality

80.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Andersonviridae› Kolesnikvirus› Erwinia_phage_vB_Eam-MM7

TaxID: 1051674

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-79
PDB
Domain cluster: rep: MH586731.1__AXY86368.1__Meda_108__00108__D3-75
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.84 43.0 5.12e-01 100.0% 73.1%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 43.0 4.41e-01 100.0% 53.4%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.81 43.0 5.09e-01 100.0% 75.0%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 42.0 4.39e-01 100.0% 55.1%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.79 42.0 5.19e-01 100.0% 84.8%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 42.0 4.30e-01 100.0% 54.9%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 41.0 4.40e-01 100.0% 60.9%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 41.0 4.85e-01 100.0% 76.5%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 43.0 5.08e-01 100.0% 82.4%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 42.0 3.79e-01 100.0% 42.7%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 41.0 5.04e-01 98.6% 89.4%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 42.0 4.22e-01 100.0% 57.1%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 46.0 4.50e-01 100.0% 62.0%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 38.0 4.24e-01 100.0% 69.5%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.67 39.0 4.23e-01 100.0% 70.0%
1zldA00 2.60.40.1920 Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA 0.65 43.0 3.90e-01 71.6% 50.0%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 41.0 4.58e-01 100.0% 83.1%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 42.0 4.66e-01 100.0% 85.0%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 41.0 4.34e-01 100.0% 76.6%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.62 38.0 4.29e-01 100.0% 86.3%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.61 35.0 3.70e-01 100.0% 62.1%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 43.0 4.29e-01 100.0% 73.1%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 40.0 4.19e-01 100.0% 77.6%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.58 48.0 3.79e-01 95.9% 81.4%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 38.0 3.42e-01 71.6% 45.9%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.57 39.0 3.07e-01 70.3% 43.3%
6e5bN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 46.0 3.38e-01 90.5% 89.4%
4dezA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.56 46.0 4.27e-01 94.6% 97.0%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.54 47.0 3.79e-01 100.0% 64.5%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.54 44.0 4.03e-01 97.3% 67.0%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.53 44.0 4.14e-01 94.6% 89.4%
3holA01 2.40.128.250 Mainly Beta › Beta Barrel › Lipocalin › 0.53 36.0 3.49e-01 70.3% 94.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.53 45.0 4.27e-01 98.6% 92.4%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.51 43.0 4.04e-01 97.3% 91.5%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.50 35.0 3.52e-01 100.0% 72.4%
2irmA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.50 42.0 2.84e-01 100.0% 85.3%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 36.0 3.99e-01 90.5% 96.6%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4946165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.96 44.0 5.12e-01 100.0% 61.8%
4997767 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.96 43.0 5.69e-01 100.0% 75.6%
5058671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.95 43.0 5.07e-01 100.0% 61.8%
4990212 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.94 43.0 5.05e-01 100.0% 61.8%
4992872 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.94 43.0 5.05e-01 100.0% 61.8%
4952887 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.94 43.0 5.03e-01 100.0% 61.8%
5033075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.93 43.0 4.99e-01 100.0% 61.8%
4015071 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.91 46.0 4.72e-01 100.0% 52.9%
3765274 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.91 48.0 4.47e-01 100.0% 44.4%
3547106 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.89 48.0 4.43e-01 100.0% 44.4%
4947995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 41.0 4.79e-01 100.0% 61.8%
3877485 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.86 44.0 4.21e-01 100.0% 44.7%
3389169 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.85 45.0 4.29e-01 100.0% 45.9%
4975150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 41.0 4.53e-01 100.0% 58.3%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.83 45.0 4.55e-01 100.0% 53.3%
3913334 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 45.0 4.63e-01 100.0% 57.1%
3261235 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.83 44.0 4.23e-01 100.0% 47.1%
4950396 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 39.0 4.52e-01 100.0% 61.8%
4317035 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 44.0 4.22e-01 100.0% 47.1%
5025079 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 39.0 4.53e-01 100.0% 61.8%
3586487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 43.0 4.15e-01 100.0% 45.9%
None — 0.82 43.0 2.41e-01 100.0% 4.5%
3881119 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.81 44.0 4.32e-01 100.0% 50.0%
None — 0.81 43.0 2.42e-01 100.0% 4.9%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.81 43.0 4.60e-01 100.0% 60.0%
3358753 4.1.1.381 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 0.81 43.0 3.23e-01 100.0% 23.6%
4890270 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.81 43.0 4.99e-01 100.0% 72.2%
3671986 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.81 43.0 4.43e-01 100.0% 55.7%
3576438 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 44.0 4.10e-01 100.0% 45.6%
4000280 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 42.0 4.88e-01 100.0% 70.9%
3721794 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 43.0 4.75e-01 100.0% 66.7%
3765289 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 43.0 4.00e-01 100.0% 44.4%
3938389 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 43.0 4.08e-01 100.0% 47.1%
3881123 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 43.0 4.07e-01 100.0% 47.1%
4002896 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 43.0 3.97e-01 100.0% 44.4%
3920666 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 42.0 3.96e-01 100.0% 44.4%
4863023 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.77 42.0 5.02e-01 100.0% 81.2%
3535278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 42.0 4.67e-01 100.0% 66.7%
3941391 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 43.0 4.73e-01 100.0% 68.3%
3221094 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 44.0 3.71e-01 100.0% 36.5%
3883159 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 41.0 3.85e-01 100.0% 44.4%
3398093 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.75 41.0 4.52e-01 100.0% 66.7%
4574546 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 43.0 4.59e-01 100.0% 66.2%
3712782 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 41.0 4.03e-01 100.0% 52.5%
3290160 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.71 42.0 4.08e-01 100.0% 53.8%
5077969 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 41.0 4.00e-01 100.0% 52.5%
4625654 4.1.1.445 ↗ beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.70 43.0 4.30e-01 100.0% 61.3%
3765126 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 44.0 4.99e-01 100.0% 89.1%
3896519 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 43.0 5.14e-01 100.0% 98.0%
4024240 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 42.0 4.16e-01 100.0% 60.0%
3923813 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 44.0 4.66e-01 100.0% 76.9%
3241890 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 41.0 3.73e-01 100.0% 49.0%
5005811 3414.1.1.0 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.62 33.0 3.28e-01 100.0% 47.5%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 42.0 4.22e-01 100.0% 70.7%
3484618 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 40.0 4.05e-01 100.0% 68.0%
3606639 9.5.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI 0.54 46.0 3.43e-01 93.2% 65.9%
1833882 9.4.1.3 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › Pab87_oct 0.54 44.0 4.13e-01 97.3% 72.0%
3599709 9.5.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B 0.53 46.0 3.57e-01 100.0% 73.7%
3648728 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.53 36.0 2.42e-01 73.0% 97.1%
3889987 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.18e-01 90.5% 38.2%
4942017 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.51 37.0 3.20e-01 77.0% 99.1%
3694098 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 42.0 3.67e-01 95.9% 87.5%