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NC_041979.1__YP_009606842.1__FDI04_gp088__00057

Bact-Vir

NC_041979.1__YP_009606842.1__FDI04_gp088__00057

Identity

Accession:
NC_041979 ↗
Kingdom:
phage

Quality

91.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-89
PDB
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cgbA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.76 54.0 4.80e-01 98.8% 54.5%
1njkA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.75 48.0 4.02e-01 100.0% 39.8%
2cy9B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.75 47.0 3.99e-01 100.0% 40.2%
2hx5A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.75 46.0 3.80e-01 100.0% 36.4%
2f3xA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.72 46.0 3.75e-01 100.0% 37.1%
4k00A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.72 46.0 3.83e-01 100.0% 38.7%
4ae7A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.72 45.0 3.46e-01 100.0% 28.5%
3bnvD00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.71 44.0 3.66e-01 100.0% 36.4%
3ir3A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.70 45.0 3.86e-01 100.0% 42.1%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.69 44.0 4.65e-01 93.9% 71.6%
6bnzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.69 45.0 3.78e-01 76.8% 39.3%
1pn2B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.68 47.0 3.80e-01 100.0% 39.2%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.68 41.0 3.55e-01 100.0% 39.5%
2gvhC01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.68 44.0 3.66e-01 100.0% 39.7%
3khpD01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.66 45.0 3.81e-01 100.0% 42.6%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.65 39.0 3.53e-01 91.5% 42.5%
2mcfA00 3.40.50.11630 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 56.0 4.65e-01 100.0% 59.5%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.63 50.0 4.75e-01 87.8% 82.7%
4gakA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 47.0 3.30e-01 79.3% 75.6%
3wewA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 47.0 3.35e-01 79.3% 73.8%
2uvaG08 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 46.0 3.13e-01 79.3% 66.6%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.62 44.0 4.00e-01 100.0% 55.4%
1kw3B02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 44.0 3.61e-01 84.1% 40.9%
6pfzD02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 56.0 3.83e-01 100.0% 45.1%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.60 44.0 4.02e-01 100.0% 58.0%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.60 49.0 4.75e-01 91.5% 96.8%
4at7A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.59 49.0 4.04e-01 91.5% 78.9%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.59 43.0 3.98e-01 100.0% 60.6%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 40.0 3.68e-01 72.0% 100.0%
3kh8B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 41.0 3.33e-01 100.0% 39.6%
1fx3B00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.57 41.0 3.43e-01 75.6% 56.4%
3li9A02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 43.0 3.72e-01 82.9% 96.4%
3kd9A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 53.0 3.64e-01 100.0% 44.6%
1whnA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 43.0 4.03e-01 81.7% 73.3%
1tkjA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.56 45.0 3.13e-01 86.6% 48.0%
1f98A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 44.0 3.86e-01 85.4% 72.0%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.56 50.0 3.52e-01 100.0% 81.0%
3iwaA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 52.0 3.61e-01 100.0% 43.0%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 37.0 3.87e-01 100.0% 76.3%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 43.0 4.16e-01 85.4% 83.2%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 47.0 3.90e-01 100.0% 67.9%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 37.0 3.82e-01 100.0% 76.3%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.54 43.0 3.77e-01 90.2% 66.9%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 40.0 3.54e-01 80.5% 77.8%
2ownA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 47.0 3.29e-01 96.3% 87.1%
2ykfA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 42.0 3.55e-01 87.8% 67.8%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 45.0 4.00e-01 100.0% 96.9%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.53 46.0 3.99e-01 100.0% 65.4%
8g3lE01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.52 48.0 3.68e-01 100.0% 82.0%
3by8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 39.0 3.44e-01 82.9% 84.2%
4mnrA02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 47.0 3.15e-01 100.0% 87.3%
4kcaA03 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.52 45.0 4.33e-01 100.0% 93.8%
3li9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 42.0 3.71e-01 90.2% 62.1%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.78e-01 100.0% 75.5%
1mwsA04 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 46.0 3.07e-01 100.0% 86.1%
2jheA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 41.0 3.79e-01 89.0% 78.7%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.51 41.0 3.45e-01 89.0% 77.9%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.50 39.0 3.55e-01 100.0% 59.3%
3cjmA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 44.0 3.15e-01 100.0% 71.8%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3950242 222.1.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.81 48.0 4.01e-01 100.0% 36.9%
3284258 222.1.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.80 48.0 4.07e-01 100.0% 38.5%
5047623 244.2.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.76 55.0 5.46e-01 78.0% 71.8%
3646611 222.1.1.2 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › Acyl-ACP_TE 0.74 48.0 3.66e-01 100.0% 30.9%
3249582 896.1.1.3 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.70 44.0 4.64e-01 95.1% 70.7%
3610425 316.1.1.23 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb 0.66 50.0 3.66e-01 81.7% 68.0%
3606814 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.65 43.0 4.47e-01 93.9% 71.8%
3181651 244.2.1.7 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rubredoxin_C 0.63 46.0 4.39e-01 98.8% 66.3%
4129336 3675.1.1.0 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.62 48.0 4.03e-01 92.7% 46.7%
3280203 222.1.1.16 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › Acyl-ACP_TE_C 0.62 41.0 3.78e-01 100.0% 53.3%
4028807 316.1.1.36 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.61 45.0 4.03e-01 79.3% 85.8%
3695479 244.2.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.60 44.0 3.91e-01 78.0% 79.2%
6661 4276.1.1.1 a+b two layers › XisI-like › XisI-like › XisI-like › XisI 0.59 43.0 3.98e-01 100.0% 60.6%
4951932 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.57 45.0 3.12e-01 86.6% 56.3%
5074648 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.57 39.0 4.02e-01 100.0% 77.3%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.57 39.0 4.40e-01 100.0% 100.0%
4021128 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.56 47.0 3.62e-01 93.9% 52.3%
4946010 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 44.0 4.03e-01 86.6% 83.6%
4985638 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 42.0 3.10e-01 81.7% 71.2%
3248853 7579.1.1.14 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.55 43.0 2.98e-01 86.6% 26.3%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.55 37.0 3.92e-01 100.0% 82.9%
3282901 223.1.1.35 a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.54 41.0 2.78e-01 82.9% 31.7%
5046054 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.54 43.0 3.86e-01 87.8% 76.7%
5058742 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.54 48.0 2.92e-01 100.0% 32.0%
4882206 223.1.1.12 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.54 43.0 3.84e-01 87.8% 66.9%
4184400 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 41.0 3.60e-01 84.1% 86.2%
4973549 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 43.0 3.74e-01 89.0% 70.0%
2831852 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.53 36.0 3.44e-01 100.0% 57.4%
4997576 223.1.1.27 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.53 43.0 3.90e-01 87.8% 82.7%
4945413 223.1.1.27 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.53 43.0 3.67e-01 89.0% 67.4%
5044942 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.53 43.0 3.95e-01 87.8% 86.7%
4962397 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.53 42.0 4.01e-01 87.8% 87.0%
5013362 223.1.1.51 a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.52 40.0 3.62e-01 86.6% 96.0%
5053325 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 41.0 3.80e-01 87.8% 85.5%
5008544 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 41.0 3.73e-01 87.8% 76.5%
5046744 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 41.0 3.85e-01 87.8% 86.7%
4960081 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.52 41.0 3.93e-01 87.8% 87.0%
4945424 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 47.0 4.01e-01 100.0% 63.1%
5018913 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.51 41.0 3.62e-01 87.8% 79.2%
5018909 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.51 40.0 3.61e-01 87.8% 79.2%
4066540 223.1.1.134 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30516 0.50 38.0 3.01e-01 82.9% 61.6%
4009014 223.1.1.35 a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.50 38.0 2.93e-01 82.9% 56.1%
5049952 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.50 39.0 3.70e-01 87.8% 84.8%
4950582 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.50 40.0 3.48e-01 87.8% 73.1%