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NC_041980.1__YP_009607089.1__FDI05_gp172__00172

Bact-Vir

NC_041980.1__YP_009607089.1__FDI05_gp172__00172

Identity

Accession:
NC_041980 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Slopekvirus› Enterobacter_phage_phiEap-3

TaxID: 1682394

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-81
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vl6A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 44.0 3.70e-01 71.2% 96.4%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 39.0 4.08e-01 71.2% 67.7%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 41.0 4.19e-01 71.2% 73.0%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.58 40.0 3.27e-01 72.7% 69.8%
6krwA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 42.0 2.80e-01 78.8% 54.5%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 40.0 3.42e-01 74.2% 82.8%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 48.0 3.95e-01 98.5% 74.6%
4ienA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 41.0 3.24e-01 78.8% 64.3%
1jsgA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.57 39.0 3.28e-01 71.2% 77.5%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 47.0 3.59e-01 95.5% 45.8%
6guuA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 41.0 4.49e-01 90.9% 94.4%
1gm5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 39.0 3.39e-01 71.2% 54.9%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 3.29e-01 90.9% 52.3%
6igbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 43.0 2.80e-01 87.9% 78.2%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 49.0 3.77e-01 100.0% 43.6%
1ew3A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 48.0 3.71e-01 100.0% 43.4%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.56 44.0 3.48e-01 90.9% 78.0%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 38.0 2.60e-01 74.2% 54.5%
1tuhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 38.0 3.19e-01 75.8% 40.5%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 38.0 2.55e-01 74.2% 42.2%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 45.0 3.18e-01 92.4% 44.9%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 3.64e-01 81.8% 63.3%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 41.0 3.20e-01 84.8% 75.2%
2jkbA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 45.0 2.89e-01 100.0% 49.1%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.86e-01 95.5% 39.6%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 45.0 3.62e-01 100.0% 49.3%
4qqsB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 2.95e-01 100.0% 65.5%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 2.96e-01 72.7% 61.1%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 2.97e-01 100.0% 48.5%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.08e-01 87.9% 36.7%
7pupA01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 42.0 3.05e-01 93.9% 54.4%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.52 44.0 2.96e-01 100.0% 70.9%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 40.0 3.34e-01 84.8% 81.7%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.51 35.0 2.42e-01 71.2% 60.9%
1r5tA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 38.0 3.11e-01 84.8% 85.1%
5i4nA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 39.0 3.57e-01 86.4% 91.3%
6ya6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 35.0 3.13e-01 72.7% 75.5%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.71e-01 100.0% 43.4%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.50 32.0 3.25e-01 86.4% 64.6%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3585538 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.70 44.0 3.82e-01 71.2% 42.0%
3793962 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.70 44.0 3.96e-01 71.2% 46.7%
3227176 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.66 47.0 3.80e-01 75.8% 39.8%
4076295 375.1.1.88 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ogr_Delta 0.65 44.0 4.73e-01 87.9% 83.6%
4418351 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.64 43.0 3.74e-01 71.2% 58.1%
3496292 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 43.0 4.68e-01 75.8% 87.3%
3605586 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.62 50.0 3.13e-01 90.9% 47.1%
3457141 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.61 42.0 2.71e-01 72.7% 71.2%
3793643 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 49.0 2.98e-01 90.9% 60.4%
4945078 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.60 39.0 2.95e-01 89.4% 27.7%
3887624 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.59 40.0 3.14e-01 72.7% 51.2%
3784777 220.1.1.32 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.59 49.0 3.81e-01 100.0% 73.9%
3544903 5.1.4.13 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.58 50.0 3.11e-01 100.0% 35.2%
3527512 220.1.1.32 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.58 49.0 3.99e-01 100.0% 77.1%
3530891 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 41.0 3.54e-01 75.8% 71.6%
4021107 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 43.0 2.95e-01 78.8% 26.2%
4950462 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 37.0 3.89e-01 86.4% 71.7%
4168380 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.58 41.0 3.36e-01 75.8% 41.5%
None — 0.58 42.0 2.78e-01 78.8% 52.9%
5034195 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 40.0 4.28e-01 80.3% 89.1%
4255495 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.57 40.0 2.77e-01 75.8% 19.6%
3881564 220.1.1.32 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.56 47.0 3.59e-01 100.0% 86.1%
3718300 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 38.0 3.66e-01 71.2% 61.3%
3429608 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.56 39.0 2.22e-01 75.8% 5.7%
3459291 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.56 44.0 2.90e-01 90.9% 24.0%
3564821 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.56 49.0 3.76e-01 100.0% 61.9%
3672372 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.56 38.0 3.66e-01 71.2% 78.7%
3990413 2.1.1.141 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › WCOB 0.55 40.0 4.00e-01 80.3% 81.4%
3928822 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.55 42.0 2.73e-01 84.8% 27.8%
3438347 5.1.5.63 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1618 0.55 44.0 3.57e-01 92.4% 89.3%
4970357 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.55 37.0 2.20e-01 84.8% 7.5%
3904291 220.1.1.32 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.55 45.0 3.34e-01 100.0% 63.9%
3722239 2003.1.2.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.55 47.0 2.90e-01 100.0% 47.5%
3172576 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.54 46.0 3.92e-01 100.0% 73.0%
3803056 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.54 39.0 2.70e-01 80.3% 44.8%
3519971 220.1.1.32 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.54 45.0 3.44e-01 98.5% 70.9%
3868838 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.54 47.0 3.58e-01 100.0% 42.5%
3994778 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 40.0 3.22e-01 86.4% 38.1%
3914097 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 40.0 2.63e-01 84.8% 25.0%
169663 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.53 45.0 3.51e-01 100.0% 44.6%
3815797 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.53 39.0 3.12e-01 81.8% 85.3%
3650675 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.53 36.0 3.09e-01 71.2% 53.6%
3684759 331.3.1.10 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AtaL 0.53 41.0 3.06e-01 84.8% 75.9%
4011588 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.52 36.0 3.53e-01 74.2% 72.0%
4927342 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 39.0 3.55e-01 81.8% 62.2%
4020990 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.50 40.0 3.18e-01 92.4% 73.5%