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NC_041982.1__YP_009607559.1__FDI09_gp07__00087
Bact-VirNC_041982.1__YP_009607559.1__FDI09_gp07__00087
Identity
- Accession:
- NC_041982 ↗
- Kingdom:
- phage
Quality
78.9
mean pLDDT
Taxonomy
TaxID: 1161933
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-60
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ex8A00 | 3.40.1790.10 | Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain | 0.67 | 57.0 | 3.58e-01 | 98.2% | 48.5% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.65 | 56.0 | 5.29e-01 | 98.2% | 82.1% |
| 3b89A01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.65 | 51.0 | 5.14e-01 | 100.0% | 92.6% |
| 3lcvB01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.63 | 50.0 | 5.02e-01 | 98.2% | 93.0% |
| 2oqtD00 | 3.40.930.10 | Alpha Beta › 3-Layer(aba) Sandwich › Mannitol-specific EII; Chain A › Mannitol-specific EII; Chain A | 0.62 | 54.0 | 3.91e-01 | 100.0% | 53.8% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.59 | 48.0 | 4.28e-01 | 98.2% | 70.9% |
| 4lnuB01 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.59 | 48.0 | 3.24e-01 | 100.0% | 87.6% |
| 4wz9A02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.58 | 48.0 | 3.22e-01 | 100.0% | 33.9% |
| 4xxiA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.56 | 45.0 | 3.38e-01 | 90.9% | 68.0% |
| 2kvdA02 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.54 | 35.0 | 3.53e-01 | 100.0% | 65.5% |
| 4fbcA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.51 | 43.0 | 3.07e-01 | 94.5% | 77.6% |
| 1e6dM01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.51 | 36.0 | 2.71e-01 | 74.5% | 88.1% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3251657 | 142.1.1.5 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI | 0.71 | 61.0 | 5.44e-01 | 100.0% | 81.2% |
| 4201756 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.70 | 58.0 | 5.85e-01 | 98.2% | 100.0% |
| 4985470 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.67 | 57.0 | 5.35e-01 | 98.2% | 78.6% |
| 4147304 | 103.5.1.2 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm | 0.67 | 52.0 | 5.12e-01 | 100.0% | 83.3% |
| 4955899 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.64 | 54.0 | 4.46e-01 | 100.0% | 50.0% |
| 3621951 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.63 | 49.0 | 5.14e-01 | 92.7% | 96.0% |
| 3289114 | 148.1.3.251 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF30647 | 0.63 | 51.0 | 4.76e-01 | 98.2% | 72.9% |
| 3406162 | 4006.1.1.13 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › DUF842 | 0.63 | 52.0 | 4.14e-01 | 100.0% | 92.0% |
| 4248743 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.61 | 50.0 | 4.74e-01 | 98.2% | 85.7% |
| 4115978 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.60 | 49.0 | 4.73e-01 | 100.0% | 83.1% |
| 3544128 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 44.0 | 3.51e-01 | 80.0% | 90.9% |
| 4530731 | 142.1.1.14 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › NiFe_hyd_3_EhaA | 0.58 | 48.0 | 4.21e-01 | 100.0% | 82.2% |
| 5044756 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.55 | 45.0 | 2.80e-01 | 98.2% | 14.9% |
| 4017790 | 11.29.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › PUD homologs › PUD homologs › PUD1_2 | 0.54 | 43.0 | 3.05e-01 | 90.9% | 34.9% |
| 2813623 | 101.1.2.106 ↗ | alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37 | 0.53 | 38.0 | 3.12e-01 | 92.7% | 38.3% |