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NC_041998.1__YP_009609940.1__FDI25_gp87__00087
Bact-VirNC_041998.1__YP_009609940.1__FDI25_gp87__00087
Identity
- Accession:
- NC_041998 ↗
- Kingdom:
- phage
Quality
80.4
mean pLDDT
Taxonomy
TaxID: 2015804
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-56
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1maeL00 | 2.60.30.10 | Mainly Beta › Sandwich › Electron Transport Ethylamine Dehydrogenase › Methylamine/Aralkylamine dehydrogenase light chain | 0.71 | 56.0 | 4.24e-01 | 86.5% | 90.3% |
| 2xp1A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.68 | 50.0 | 4.18e-01 | 80.8% | 54.7% |
| 4nehA01 | 2.130.10.130 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal | 0.67 | 47.0 | 2.81e-01 | 75.0% | 16.4% |
| 3k2tA01 | 3.30.505.50 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain | 0.65 | 48.0 | 5.01e-01 | 82.7% | 91.3% |
| 3mqgA02 | 2.20.70.110 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.64 | 44.0 | 4.74e-01 | 100.0% | 94.9% |
| 3li9A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.62 | 50.0 | 3.89e-01 | 94.2% | 65.3% |
| 1jofA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 48.0 | 2.91e-01 | 100.0% | 12.6% |
| 3lifA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.61 | 50.0 | 4.33e-01 | 100.0% | 76.7% |
| 2pbfA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 42.0 | 2.86e-01 | 75.0% | 19.3% |
| 1clwA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.61 | 42.0 | 2.43e-01 | 75.0% | 7.4% |
| 2jheA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 48.0 | 3.98e-01 | 96.2% | 77.8% |
| 1x31C01 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.59 | 50.0 | 4.04e-01 | 98.1% | 61.0% |
| 2cg7A01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.59 | 41.0 | 4.19e-01 | 80.8% | 87.0% |
| 5i7pA02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.57 | 45.0 | 4.64e-01 | 94.2% | 97.9% |
| 3pvlA05 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 45.0 | 4.12e-01 | 94.2% | 69.7% |
| 2jraA01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.57 | 39.0 | 4.16e-01 | 80.8% | 90.5% |
| 2kd3A00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.56 | 44.0 | 3.63e-01 | 86.5% | 80.4% |
| 6qm7J00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.56 | 40.0 | 2.77e-01 | 78.8% | 25.0% |
| 1dhxA03 | 3.90.249.10 | Alpha Beta › Alpha-Beta Complex › Hexon Major Viral Coat Protein; domain 3 › Hexon Major Viral Coat Protein, domain 3 | 0.56 | 46.0 | 3.05e-01 | 100.0% | 66.9% |
| 2i9yA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 40.0 | 2.96e-01 | 80.8% | 44.6% |
| 6l4lA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.55 | 46.0 | 3.69e-01 | 100.0% | 82.8% |
| 7uqyB01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.55 | 37.0 | 2.56e-01 | 73.1% | 56.5% |
| 1vw3C01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 38.0 | 2.99e-01 | 78.8% | 55.7% |
| 1t92A01 | 3.30.700.10 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin | 0.53 | 41.0 | 3.50e-01 | 92.3% | 85.9% |
| 6oauA02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.53 | 43.0 | 3.48e-01 | 100.0% | 77.0% |
| 5fmgG00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.52 | 39.0 | 2.68e-01 | 84.6% | 24.7% |
| 6m90A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 40.0 | 2.61e-01 | 100.0% | 16.3% |
| 7z0sE02 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.52 | 41.0 | 2.65e-01 | 100.0% | 84.2% |
| 1icwB00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 39.0 | 3.66e-01 | 98.1% | 69.7% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5036655 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.79 | 63.0 | 6.02e-01 | 100.0% | 75.0% |
| 3310464 | 375.1.1.69 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 | 0.76 | 63.0 | 6.45e-01 | 100.0% | 98.0% |
| 2088430 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.66 | 49.0 | 4.67e-01 | 82.7% | 68.9% |
| 3954395 | 3097.1.1.0 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y | 0.66 | 49.0 | 4.82e-01 | 84.6% | 76.4% |
| 4554426 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.65 | 48.0 | 4.81e-01 | 84.6% | 77.8% |
| 4028413 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.65 | 48.0 | 2.88e-01 | 80.8% | 96.4% |
| 4945330 | 4294.1.1.11 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › ResIII | 0.64 | 45.0 | 4.21e-01 | 100.0% | 58.6% |
| 1734768 | 4187.1.1.1 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB | 0.63 | 44.0 | 4.28e-01 | 75.0% | 74.1% |
| 2858693 | 66.1.1.0 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain | 0.62 | 45.0 | 4.61e-01 | 90.4% | 85.7% |
| 3471405 | 223.7.1.1 ↗ | a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like › C12orf66_like | 0.60 | 49.0 | 3.80e-01 | 96.2% | 63.8% |
| 5052929 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.60 | 44.0 | 3.04e-01 | 82.7% | 25.5% |
| 5060850 | 5.1.4.43 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 | 0.59 | 42.0 | 2.57e-01 | 76.9% | 23.8% |
| 3839929 | 3174.2.1.1 ↗ | beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA | 0.58 | 50.0 | 4.72e-01 | 98.1% | 81.0% |
| 2855565 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.58 | 49.0 | 4.19e-01 | 100.0% | 88.9% |
| 3932900 | 2484.1.1.145 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 | 0.58 | 48.0 | 3.37e-01 | 100.0% | 37.4% |
| 3276828 | 11.1.1.698 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TgrO1 | 0.55 | 41.0 | 3.59e-01 | 84.6% | 75.3% |
| 5039686 | 5.1.3.22 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH | 0.55 | 44.0 | 3.04e-01 | 100.0% | 26.2% |
| 5022543 | 2002.1.1.36 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind | 0.54 | 38.0 | 2.20e-01 | 75.0% | 74.7% |
| 4189433 | 223.1.1.81 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_WalK | 0.53 | 43.0 | 2.97e-01 | 96.2% | 40.0% |
| 3249998 | 5.1.5.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FG-GAP_3 | 0.52 | 36.0 | 2.33e-01 | 76.9% | 38.7% |
| 1106759 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.50 | 43.0 | 3.47e-01 | 94.2% | 93.8% |
| 4410540 | 3321.1.1.1 ↗ | a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander | 0.50 | 34.0 | 3.01e-01 | 73.1% | 88.2% |