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NC_042000.1__YP_009610081.1__FDI27_gp067__00067

Bact-Vir

NC_042000.1__YP_009610081.1__FDI27_gp067__00067

Identity

Accession:
NC_042000 ↗
Kingdom:
phage

Quality

70.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klausavirus› Arthrobacter_phage_Colucci

TaxID: 2015834

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 17-85
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 42.0 3.90e-01 72.5% 94.4%
2q5iA03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.59 47.0 3.91e-01 87.0% 90.1%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 40.0 3.57e-01 73.9% 58.1%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 41.0 3.70e-01 79.7% 74.0%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.55 38.0 3.09e-01 72.5% 86.9%
1wiiA01 2.20.25.190 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 37.0 3.90e-01 84.1% 79.0%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 46.0 2.98e-01 95.7% 100.0%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.54 38.0 3.82e-01 95.7% 73.0%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.54 41.0 3.17e-01 85.5% 62.9%
1sr4A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 38.0 2.94e-01 78.3% 89.2%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 42.0 3.40e-01 91.3% 44.3%
2qe8A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 37.0 2.45e-01 79.7% 21.1%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.50 35.0 3.01e-01 73.9% 89.3%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3315491 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 54.0 4.30e-01 92.8% 48.6%
3305101 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 52.0 4.01e-01 91.3% 40.7%
3939412 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 40.0 3.64e-01 91.3% 49.5%
4969848 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.61 49.0 4.15e-01 91.3% 96.7%
4600920 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.60 50.0 3.98e-01 95.7% 89.3%
3403344 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.60 41.0 4.31e-01 71.0% 86.7%
3744042 216.1.1.27 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › HGTP_anticodon2 0.59 50.0 4.01e-01 98.6% 86.9%
3260374 220.1.1.43 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.58 35.0 3.20e-01 79.7% 44.1%
4963351 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 40.0 3.46e-01 91.3% 45.0%
4021151 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 45.0 3.09e-01 87.0% 85.5%
3205497 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 39.0 3.49e-01 75.4% 61.0%
4943339 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 37.0 3.25e-01 95.7% 48.0%
3335901 12.3.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.51 35.0 2.48e-01 72.5% 78.8%
3952393 2003.1.9.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.50 41.0 2.81e-01 95.7% 31.9%