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NC_042001.1__YP_009610204.1__FDI28_gp34__00076
Bact-VirNC_042001.1__YP_009610204.1__FDI28_gp34__00076
Identity
- Accession:
- NC_042001 ↗
- Kingdom:
- phage
Quality
84.5
mean pLDDT
Taxonomy
TaxID: 2015839
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-117
Domain cluster:
rep: NC_048048.2__YP_009810236.1__HOU03_gp024__00024__D4-98
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4yt2A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 55.0 | 4.31e-01 | 93.6% | 99.5% |
| 1nioA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.64 | 50.0 | 4.18e-01 | 84.0% | 87.7% |
| 1iftA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.64 | 53.0 | 4.30e-01 | 89.4% | 86.2% |
| 3ktzA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.60 | 50.0 | 4.14e-01 | 91.5% | 92.9% |
| 3c0kA02 | 3.30.750.80 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like | 0.60 | 48.0 | 4.58e-01 | 87.2% | 79.8% |
| 1ce7A01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.59 | 49.0 | 4.05e-01 | 89.4% | 87.0% |
| 2y0cB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 45.0 | 3.60e-01 | 83.0% | 99.0% |
| 7tocA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 50.0 | 3.92e-01 | 95.7% | 87.1% |
| 3mvgA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.58 | 48.0 | 3.99e-01 | 89.4% | 85.9% |
| 1hyrC01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.58 | 44.0 | 3.58e-01 | 81.9% | 81.1% |
| 2o5nA02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.57 | 44.0 | 3.66e-01 | 80.9% | 79.0% |
| 2nvmA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.56 | 42.0 | 4.10e-01 | 80.9% | 90.4% |
| 4alzA03 | 3.30.70.1770 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 36.0 | 4.20e-01 | 76.6% | 96.9% |
| 4za3A01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.55 | 50.0 | 4.15e-01 | 100.0% | 73.0% |
| 1ggpA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.55 | 49.0 | 4.22e-01 | 100.0% | 77.9% |
| 2hv2A03 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 42.0 | 3.64e-01 | 85.1% | 75.2% |
| 4yt9A01 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.53 | 47.0 | 3.28e-01 | 98.9% | 48.4% |
| 1zt4C01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.52 | 39.0 | 3.25e-01 | 81.9% | 78.2% |
| 1q7hA01 | 3.10.450.120 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 | 0.52 | 34.0 | 3.99e-01 | 86.2% | 96.9% |
| 1yprA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.51 | 40.0 | 3.67e-01 | 92.6% | 64.8% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4934918 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.65 | 39.0 | 4.45e-01 | 70.2% | 80.0% |
| 3676900 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.63 | 48.0 | 4.57e-01 | 97.9% | 67.8% |
| 3305992 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.60 | 51.0 | 3.64e-01 | 95.7% | 57.1% |
| 4928895 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.57 | 37.0 | 2.66e-01 | 71.3% | 23.5% |
| 3755672 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.57 | 41.0 | 3.29e-01 | 76.6% | 61.0% |
| 3700776 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.56 | 34.0 | 3.85e-01 | 97.9% | 81.4% |
| 5027476 | 2008.1.1.17 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 | 0.55 | 39.0 | 3.91e-01 | 89.4% | 70.0% |
| 4990490 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.54 | 33.0 | 3.24e-01 | 81.9% | 55.0% |
| 3659345 | 10.1.1.12 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16,XET_C | 0.52 | 41.0 | 2.94e-01 | 86.2% | 76.1% |
| 4378012 | 241.7.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N | 0.52 | 33.0 | 3.24e-01 | 71.3% | 58.1% |
| 6438 | 243.6.1.1 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 | 0.52 | 34.0 | 3.97e-01 | 86.2% | 97.0% |
| 3451193 | 292.1.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP | 0.52 | 46.0 | 3.38e-01 | 100.0% | 54.1% |
| 4031639 | 241.7.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N | 0.51 | 34.0 | 3.50e-01 | 89.4% | 71.1% |
| 5033945 | 243.6.1.1 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 | 0.51 | 34.0 | 3.84e-01 | 86.2% | 92.9% |
| 4383552 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.50 | 42.0 | 3.21e-01 | 94.7% | 94.3% |
| 5067171 | 243.6.1.1 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 | 0.50 | 33.0 | 3.75e-01 | 88.3% | 95.4% |
| 3961571 | 3699.1.1.3 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synth | 0.50 | 40.0 | 3.77e-01 | 89.4% | 96.7% |
| 4952288 | 2008.1.1.114 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 | 0.50 | 34.0 | 3.38e-01 | 70.2% | 91.0% |