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NC_042009.1__YP_009610963.1__FDI36_gp066__00187

Bact-Vir

NC_042009.1__YP_009610963.1__FDI36_gp066__00187

Identity

Accession:
NC_042009 ↗
Kingdom:
phage

Quality

85.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-51
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.86 78.0 7.04e-01 100.0% 88.2%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.86 72.0 5.74e-01 100.0% 47.1%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.86 74.0 6.36e-01 100.0% 61.7%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.83 71.0 5.42e-01 100.0% 41.5%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 71.0 5.21e-01 100.0% 37.5%
2yevC00 6.10.280.110 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 74.0 6.91e-01 100.0% 95.2%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.83 70.0 6.19e-01 100.0% 65.3%
1p49A02 1.10.287.550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.81 70.0 6.76e-01 100.0% 94.9%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.81 65.0 6.70e-01 96.1% 95.8%
1gnlA01 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.81 67.0 4.85e-01 92.2% 33.8%
2fb5A01 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.80 70.0 6.29e-01 100.0% 75.0%
2c2aA01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.80 71.0 5.90e-01 100.0% 61.1%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.80 66.0 6.16e-01 100.0% 73.8%
1ucuA01 6.10.280.190 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 67.0 6.10e-01 100.0% 70.6%
2kp8A00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.80 70.0 6.25e-01 100.0% 72.2%
1ailA00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.79 65.0 5.89e-01 96.1% 67.1%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.79 67.0 5.11e-01 98.0% 96.8%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 68.0 6.02e-01 100.0% 80.5%
3fxdC00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.79 62.0 6.32e-01 98.0% 88.0%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.79 60.0 5.05e-01 84.3% 96.6%
4rg8A04 1.10.287.1240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 65.0 6.06e-01 90.2% 77.4%
1b3qA01 1.10.287.560 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain 0.78 64.0 6.10e-01 94.1% 79.0%
1pd3A00 1.10.287.230 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 66.0 6.48e-01 100.0% 88.9%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.78 68.0 5.44e-01 100.0% 49.5%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.78 68.0 6.31e-01 100.0% 82.8%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.77 63.0 5.65e-01 100.0% 64.0%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 65.0 6.02e-01 100.0% 75.4%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 62.0 4.29e-01 96.1% 28.0%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.75 63.0 4.86e-01 100.0% 41.6%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.74 61.0 5.08e-01 98.0% 72.7%
3dmqA08 6.10.140.1500 Special › Helix non-globular › Helix Hairpins › 0.74 61.0 5.31e-01 100.0% 60.0%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.73 63.0 5.39e-01 100.0% 61.2%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.72 62.0 5.84e-01 100.0% 95.3%
1b06A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.72 63.0 5.78e-01 100.0% 77.6%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.72 62.0 5.70e-01 100.0% 76.5%
2kwhA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 60.0 5.87e-01 100.0% 89.3%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.70 56.0 5.19e-01 100.0% 69.0%
7metA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.70 58.0 3.65e-01 100.0% 25.6%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 59.0 4.82e-01 100.0% 51.5%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.70 59.0 4.95e-01 100.0% 57.4%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.70 59.0 5.65e-01 100.0% 85.0%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.70 59.0 5.30e-01 98.0% 68.9%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.69 57.0 5.08e-01 98.0% 67.1%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.69 57.0 4.95e-01 100.0% 60.2%
4cb8A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.67 56.0 3.31e-01 100.0% 10.9%
6ygiB01 1.10.4090.10 Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus 0.67 55.0 4.12e-01 100.0% 34.9%
3h6pC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.66 57.0 5.61e-01 98.0% 94.6%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.66 55.0 5.37e-01 98.0% 89.7%
4l8jA04 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.65 56.0 5.39e-01 100.0% 89.8%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 56.0 5.29e-01 96.1% 82.0%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.64 48.0 4.78e-01 80.4% 100.0%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.64 50.0 5.08e-01 96.1% 98.0%
1h3lB00 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.64 45.0 3.88e-01 72.5% 47.4%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.64 58.0 4.79e-01 98.0% 62.4%
2l37A00 6.10.250.890 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.64 41.0 4.46e-01 84.3% 79.1%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.63 54.0 4.58e-01 100.0% 72.2%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.62 53.0 3.38e-01 100.0% 34.0%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3214557 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.96 86.0 6.80e-01 100.0% 51.6%
3884746 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.93 86.0 6.13e-01 100.0% 40.7%
3287986 605.8.1.7 alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › DUF6374 0.92 82.0 8.33e-01 98.0% 100.0%
3725506 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.92 84.0 6.37e-01 100.0% 46.4%
3747935 192.29.1.181 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TMEM120A-B 0.90 73.0 5.80e-01 100.0% 46.3%
3612915 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.90 82.0 6.35e-01 100.0% 49.5%
3997366 4015.1.1.1 alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 0.90 72.0 4.47e-01 100.0% 17.3%
3927738 632.8.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 0.89 76.0 6.06e-01 100.0% 49.5%
3504889 604.22.1.1 alpha bundles › Spectrin repeat-like › tubulin binding cofactor C N-terminal domain › tubulin binding cofactor C N-terminal domain › TBCC_N 0.89 81.0 6.71e-01 100.0% 61.2%
3956826 150.8.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE 0.87 73.0 4.97e-01 100.0% 27.6%
3413114 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.86 74.0 6.78e-01 100.0% 73.8%
4972154 604.12.1.135 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Oxidored_q2 0.86 77.0 6.11e-01 100.0% 56.0%
3752758 3755.3.1.467 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DRC7_C 0.85 71.0 5.07e-01 100.0% 32.2%
5044800 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.85 71.0 6.14e-01 100.0% 60.0%
3485831 109.4.1.840 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CFA69_ARM_rpt 0.85 75.0 4.68e-01 100.0% 20.0%
4303085 3755.3.1.467 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DRC7_C 0.84 70.0 5.33e-01 100.0% 40.0%
3393794 3922.1.1.211 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DRC7_C 0.84 75.0 5.45e-01 100.0% 40.7%
4493879 4992.1.1.23 extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N 0.84 69.0 5.37e-01 100.0% 42.7%
3230694 1065.1.1.5 alpha bundles › SPX domain › SPX domain › SPX domain › DUF19 0.83 73.0 5.20e-01 100.0% 34.0%
5050356 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.83 70.0 6.29e-01 100.0% 68.6%
3593287 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.82 71.0 5.31e-01 100.0% 39.2%
4216245 4082.1.1.1 alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain › Hairy_orange 0.81 58.0 6.17e-01 76.5% 93.3%
3484074 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.81 67.0 4.89e-01 100.0% 34.3%
5032752 5069.1.3.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.80 70.0 5.94e-01 100.0% 61.2%
3915218 5076.2.1.9 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › Choline_transpo 0.80 66.0 4.11e-01 100.0% 17.1%
3465231 192.15.1.189 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Frigida 0.79 65.0 5.69e-01 96.1% 60.0%
4110261 3748.1.1.2 extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › CSN5_C 0.79 69.0 5.85e-01 100.0% 60.0%
5038564 3456.1.1.1 extended segments › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A › Oxidored_q4 0.78 65.0 4.92e-01 100.0% 39.0%
3449618 3456.1.1.1 extended segments › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A › Oxidored_q4 0.78 65.0 4.60e-01 100.0% 31.0%
3477418 4992.1.1.12 extended segments › RelB-like › RelB-like › RelB-like › LIN9_C 0.78 65.0 5.47e-01 100.0% 54.7%
3216366 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.78 67.0 4.69e-01 100.0% 30.0%
3686172 109.4.1.496 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec5 0.77 67.0 3.73e-01 100.0% 7.8%
3429014 5059.1.1.3 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT 0.77 69.0 5.80e-01 100.0% 60.0%
4177674 4992.1.1.23 extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N 0.76 63.0 4.97e-01 100.0% 43.6%
3840952 601.19.1.39 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › LIN9_C 0.75 64.0 5.70e-01 100.0% 100.0%
3934599 603.2.1.0 alpha bundles › STAT-like › STAT › STAT 0.75 63.0 5.00e-01 100.0% 46.7%
4939264 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.75 65.0 5.91e-01 100.0% 74.3%
3754639 150.5.1.106 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › LIN9_C 0.74 63.0 5.42e-01 100.0% 88.2%
2485668 7025.1.1.2 alpha bundles › LIN9-LIN52 heterodimer › LIN9-LIN52 heterodimer › LIN9-LIN52 heterodimer › LIN9_C 0.73 62.0 5.36e-01 100.0% 82.1%
3995509 3730.1.1.0 alpha arrays › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain 0.71 56.0 5.27e-01 86.3% 73.0%
3784740 3712.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 0.71 58.0 5.28e-01 100.0% 70.7%
4983374 1075.1.2.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.69 60.0 4.44e-01 100.0% 38.5%
3899274 109.4.1.108 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CTNNBL 0.67 57.0 3.28e-01 100.0% 9.7%
4353218 605.1.1.167 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PKK 0.60 53.0 4.60e-01 98.0% 65.3%