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NC_042014.1__YP_009612432.1__FDI41_gp53__00053
Bact-VirNC_042014.1__YP_009612432.1__FDI41_gp53__00053
Identity
- Accession:
- NC_042014 ↗
- Kingdom:
- phage
Quality
72.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Berryhillviridae›
Jawnskivirus›
Arthrobacter_phage_Piccoletto
TaxID: 2024282
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-90
Domain cluster:
rep: NC_031231.1__YP_009301300.1__BJD78_gp43__00043__D2-79
D2
high
residues 96-196
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c4bA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.71 | 44.0 | 5.26e-01 | 75.2% | 94.0% |
| 1gqyB02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.62 | 43.0 | 3.36e-01 | 72.3% | 36.9% |
| 2wtzA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.60 | 42.0 | 3.20e-01 | 72.3% | 34.6% |
| 4fczA00 | 3.10.450.710 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Tgt2/MlaC | 0.60 | 44.0 | 3.68e-01 | 79.2% | 79.8% |
| 2cztA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.58 | 42.0 | 3.65e-01 | 74.3% | 72.9% |
| 3tfzB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 48.0 | 4.08e-01 | 90.1% | 100.0% |
| 3ayjA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 42.0 | 2.87e-01 | 76.2% | 81.3% |
| 2o62A01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 40.0 | 3.67e-01 | 72.3% | 71.0% |
| 1reoA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 41.0 | 3.68e-01 | 77.2% | 95.9% |
| 4gioA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 39.0 | 4.07e-01 | 72.3% | 100.0% |
| 3ebkB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 41.0 | 3.57e-01 | 78.2% | 57.9% |
| 2eigA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 39.0 | 2.98e-01 | 71.3% | 64.8% |
| 4xrtA02 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 47.0 | 4.00e-01 | 92.1% | 100.0% |
| 3lhnA00 | 2.40.128.640 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 37.0 | 3.72e-01 | 71.3% | 66.4% |
| 1dgmA01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.54 | 38.0 | 2.81e-01 | 71.3% | 86.2% |
| 3kstA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.54 | 41.0 | 2.96e-01 | 81.2% | 57.0% |
| 8bddA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 43.0 | 3.00e-01 | 89.1% | 47.5% |
| 3nixB00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 45.0 | 3.13e-01 | 100.0% | 100.0% |
| 4ncbA01 | 3.30.530.60 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.52 | 38.0 | 3.41e-01 | 77.2% | 75.3% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.52 | 38.0 | 3.43e-01 | 76.2% | 83.6% |
| 3otlA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 40.0 | 3.60e-01 | 87.1% | 71.2% |
| 1fhoA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 36.0 | 3.43e-01 | 72.3% | 64.7% |
| 4xrtA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 40.0 | 3.63e-01 | 86.1% | 73.2% |
| 2il5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 44.0 | 3.80e-01 | 95.0% | 100.0% |
| 3flpA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 40.0 | 3.16e-01 | 85.1% | 42.4% |
| 4uf7B00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.51 | 41.0 | 2.72e-01 | 87.1% | 33.7% |
| 2wweA01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 39.0 | 3.88e-01 | 81.2% | 80.8% |
| 2o07A01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.51 | 30.0 | 3.74e-01 | 72.3% | 100.0% |
| 3cjeA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.50 | 37.0 | 3.34e-01 | 95.0% | 53.3% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3593387 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.81 | 51.0 | 4.57e-01 | 70.3% | 47.8% |
| 4932880 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.76 | 56.0 | 5.97e-01 | 77.2% | 90.0% |
| 3168516 | 223.2.1.10 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA | 0.76 | 52.0 | 4.51e-01 | 76.2% | 47.3% |
| 3407363 | 223.2.1.10 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA | 0.75 | 50.0 | 4.45e-01 | 75.2% | 47.6% |
| 3718648 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.75 | 47.0 | 4.59e-01 | 79.2% | 58.3% |
| 1168794 | 330.1.1.8 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dsRBD | 0.71 | 44.0 | 4.57e-01 | 72.3% | 66.3% |
| 4018116 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.70 | 40.0 | 3.86e-01 | 71.3% | 48.3% |
| 1877618 | 330.15.1.1 ↗ | a+b two layers › dsRBD-like › VtrA protein periplasmic domain › VtrA protein periplasmic domain › VtrA_C | 0.70 | 49.0 | 5.12e-01 | 76.2% | 81.1% |
| 4023939 | 223.2.1.8 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin | 0.68 | 42.0 | 3.75e-01 | 73.3% | 43.4% |
| 4140206 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.67 | 49.0 | 5.26e-01 | 83.2% | 90.6% |
| 3989851 | 11.1.1.1339 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CFSR | 0.62 | 48.0 | 4.22e-01 | 81.2% | 73.1% |
| 4376478 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.61 | 44.0 | 4.62e-01 | 75.2% | 88.9% |
| 3887951 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.60 | 41.0 | 3.96e-01 | 71.3% | 61.7% |
| 5044400 | 321.1.1.0 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase | 0.60 | 49.0 | 3.18e-01 | 88.1% | 31.0% |
| 4423214 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.59 | 41.0 | 4.10e-01 | 71.3% | 68.6% |
| 3714021 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.58 | 46.0 | 3.04e-01 | 84.2% | 85.8% |
| 3459823 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.57 | 38.0 | 2.77e-01 | 85.1% | 24.4% |
| 5031724 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.57 | 36.0 | 3.79e-01 | 83.2% | 70.0% |
| 3717566 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.57 | 44.0 | 3.23e-01 | 81.2% | 49.8% |
| 3970416 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.57 | 42.0 | 3.06e-01 | 78.2% | 69.7% |
| 3431397 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.56 | 40.0 | 2.71e-01 | 73.3% | 38.3% |
| 3236101 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.55 | 37.0 | 3.73e-01 | 79.2% | 69.0% |
| 1883345 | 1099.1.1.1 ↗ | a+b two layers › RNase inhibitor Dip › RNase inhibitor Dip › RNase inhibitor Dip › Dip | 0.54 | 45.0 | 3.47e-01 | 94.1% | 63.2% |
| 4966092 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.52 | 34.0 | 3.24e-01 | 79.2% | 54.0% |
| 5046928 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.52 | 39.0 | 4.09e-01 | 79.2% | 100.0% |
| 3837575 | 5.1.3.144 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like | 0.52 | 39.0 | 2.73e-01 | 81.2% | 97.8% |
| 4361151 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.52 | 37.0 | 4.17e-01 | 76.2% | 100.0% |
| 4002646 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 36.0 | 2.66e-01 | 74.3% | 43.5% |
D3
medium
residues 231-304