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NC_042018.1__YP_009612763.1__FDI45_gp019__00019

Bact-Vir

NC_042018.1__YP_009612763.1__FDI45_gp019__00019

Identity

Accession:
NC_042018 ↗
Kingdom:
phage

Quality

80.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Risingsunvirus› Erwinia_phage_vB_EamM_RisingSun

TaxID: 2026080

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-112
PDB
Domain cluster: rep: NC_007623.1__YP_418050.1__PPEV_gp017__00017__D2-111
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 49.0 5.57e-01 70.3% 100.0%
4nbqB02 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.67 46.0 5.23e-01 75.7% 96.3%
3o7qA02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.64 46.0 3.88e-01 74.8% 93.2%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 47.0 4.45e-01 77.5% 65.7%
3u4qA02 1.10.274.50 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.63 48.0 4.32e-01 79.3% 76.0%
1x9fD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.63 47.0 4.34e-01 77.5% 77.1%
3q23A04 6.10.140.1370 Special › Helix non-globular › Helix Hairpins › 0.58 42.0 4.50e-01 74.8% 100.0%
4lmoA00 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.58 46.0 3.51e-01 83.8% 45.4%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.58 41.0 4.43e-01 78.4% 89.0%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.57 42.0 4.07e-01 77.5% 88.9%
3d3oA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.57 42.0 3.61e-01 76.6% 61.4%
7dswA01 1.20.1530.20 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › 0.57 44.0 3.01e-01 82.9% 63.7%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 39.0 3.13e-01 71.2% 95.1%
1dpsA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.56 41.0 3.71e-01 78.4% 78.6%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.54 38.0 4.18e-01 73.9% 95.3%
4ezbA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.54 41.0 4.03e-01 98.2% 76.1%
2fp1B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.54 41.0 3.66e-01 82.0% 87.8%
2qdfA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.53 34.0 3.75e-01 83.8% 84.3%
1gcbA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 40.0 2.80e-01 81.1% 40.7%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 39.0 3.67e-01 78.4% 94.7%
6j09A02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.52 33.0 3.70e-01 83.8% 89.7%
1vw4L01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.51 43.0 4.13e-01 95.5% 78.5%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3839206 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.73 50.0 5.75e-01 76.6% 96.2%
3515942 7516.1.1.82 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Chitin_synth_2 0.65 48.0 2.94e-01 78.4% 53.3%
3957626 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.64 46.0 4.23e-01 82.0% 56.7%
4143595 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.64 45.0 4.83e-01 73.9% 86.3%
2889550 4995.1.1.0 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like 0.63 38.0 4.21e-01 78.4% 76.2%
3953241 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.63 46.0 3.72e-01 82.0% 38.6%
3960236 106.1.1.11 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.61 46.0 4.24e-01 80.2% 73.1%
3547013 621.1.1.8 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › GVIN1 0.59 41.0 4.09e-01 71.2% 90.4%
3405406 5051.1.1.6 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.58 49.0 3.36e-01 93.7% 73.3%
3231495 5057.1.1.0 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.58 47.0 3.71e-01 89.2% 72.1%
338972 4966.1.1.2 ↗ alpha arrays › inserted helical bundle subdomain in T7 RNA polymerase › inserted helical bundle subdomain in T7 RNA polymerase › inserted helical bundle subdomain in T7 RNA polymerase › vRNAP_plug 0.58 42.0 4.30e-01 76.6% 89.6%
4170997 304.48.1.39 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › MatK_N 0.56 40.0 3.31e-01 74.8% 80.0%
None — 0.56 46.0 2.95e-01 91.9% 32.4%
4091685 7014.1.1.1 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.55 37.0 3.78e-01 77.5% 69.7%
3629317 7516.1.1.82 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Chitin_synth_2 0.55 47.0 3.24e-01 93.7% 42.3%
4471300 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.54 48.0 3.17e-01 100.0% 68.5%
3962343 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 43.0 3.58e-01 85.6% 92.0%
4338725 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.53 39.0 3.93e-01 100.0% 75.7%
4096107 140.1.1.4 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e,DALR_2 0.52 45.0 3.66e-01 95.5% 87.0%
4068028 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.51 45.0 3.35e-01 97.3% 60.7%
3994598 3615.1.1.12 ↗ alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › PIEZO 0.51 36.0 3.10e-01 73.0% 55.4%