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NC_042018.1__YP_009612776.1__FDI45_gp032__00032

Bact-Vir

NC_042018.1__YP_009612776.1__FDI45_gp032__00032

Identity

Accession:
NC_042018 ↗
Kingdom:
phage

Quality

66.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Risingsunvirus› Erwinia_phage_vB_EamM_RisingSun

TaxID: 2026080

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-53
PDB
D2 medium residues 54-143
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 33.0 4.19e-01 80.0% 100.0%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 34.0 3.86e-01 78.9% 77.8%
1extA02 2.10.50.10 Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 0.58 25.0 3.18e-01 74.4% 66.7%
1xzzA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 44.0 3.39e-01 83.3% 97.7%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 4.02e-01 82.2% 77.4%
1ileA02 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.56 42.0 3.40e-01 82.2% 92.3%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 35.0 4.00e-01 80.0% 90.3%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.55 33.0 3.52e-01 100.0% 67.5%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 38.0 3.47e-01 73.3% 84.1%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 32.0 3.68e-01 77.8% 82.5%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 35.0 3.38e-01 83.3% 58.5%
5eqjB01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 35.0 3.83e-01 78.9% 84.5%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 32.0 3.61e-01 81.1% 84.1%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 4.04e-01 97.8% 80.3%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 30.0 3.55e-01 81.1% 92.7%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 42.0 3.03e-01 94.4% 35.4%
1o70A01 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.51 37.0 3.23e-01 76.7% 79.3%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.51 43.0 3.59e-01 98.9% 91.3%
1y5lA02 3.40.50.12440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 38.0 2.15e-01 82.2% 79.8%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4985100 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 33.0 4.16e-01 78.9% 96.0%
3326132 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 32.0 3.67e-01 80.0% 72.3%
3213121 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.59 37.0 3.96e-01 83.3% 74.7%
4432457 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 34.0 3.81e-01 83.3% 75.7%
3798262 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 49.0 4.19e-01 96.7% 81.3%
3850775 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.57 33.0 3.75e-01 82.2% 78.5%
4002398 220.1.1.94 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CLEC16A_C 0.56 46.0 3.84e-01 92.2% 63.0%
3730835 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.56 36.0 3.58e-01 81.1% 62.1%
4139090 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.56 33.0 3.92e-01 81.1% 94.5%
4079197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 34.0 3.54e-01 80.0% 64.7%
3518268 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.71e-01 83.3% 77.8%
3535298 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 34.0 3.44e-01 82.2% 62.2%
3236689 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 29.0 3.57e-01 81.1% 87.3%
3398093 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.53 32.0 3.58e-01 83.3% 86.7%
3945749 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 36.0 3.54e-01 83.3% 64.0%
3340540 1.1.17.19 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Nal1_C 0.53 44.0 3.24e-01 96.7% 91.6%
3286662 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.52 37.0 3.65e-01 92.2% 68.0%
3467678 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 35.0 3.35e-01 82.2% 58.2%
3789270 5.1.4.115 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CRT10 0.52 42.0 2.68e-01 93.3% 22.6%
3934782 633.23.1.3 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › L_HMGIC_fpl 0.52 41.0 3.24e-01 86.7% 79.5%
3913687 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 32.0 3.24e-01 82.2% 61.1%
3916753 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 44.0 3.70e-01 100.0% 77.5%
3215406 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.50 44.0 2.81e-01 100.0% 91.2%
3588727 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 33.0 3.64e-01 80.0% 85.7%
3294392 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.50 28.0 2.92e-01 98.9% 54.1%