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NC_042018.1__YP_009612793.1__FDI45_gp049__00049

Bact-Vir

NC_042018.1__YP_009612793.1__FDI45_gp049__00049

Identity

Accession:
NC_042018 ↗
Kingdom:
phage

Quality

80.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Risingsunvirus› Erwinia_phage_vB_EamM_RisingSun

TaxID: 2026080

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-96
PDB
Domain cluster: rep: NC_070998.1__YP_010674744.1__PQC64_gp185__00078__D197-270
D2 high residues 99-151
PDB
Domain cluster: rep: MG592441.1__AUR84811.1__NVP1063O_144__00144__D51-98
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ff4A03 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.72 59.0 4.88e-01 94.3% 95.9%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.67 58.0 5.03e-01 100.0% 100.0%
1j0hA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.67 45.0 3.86e-01 92.5% 44.6%
3gidB02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.63 46.0 3.98e-01 92.5% 50.6%
4ekuA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 48.0 3.76e-01 98.1% 38.5%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.63 50.0 4.64e-01 100.0% 69.7%
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.62 49.0 4.92e-01 88.7% 100.0%
2bkfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 45.0 3.96e-01 83.0% 95.2%
4tq1A02 3.10.20.620 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 43.0 3.75e-01 83.0% 84.6%
1jceA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 41.0 3.03e-01 100.0% 26.8%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.57 45.0 4.59e-01 90.6% 100.0%
4tpuA02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.56 37.0 4.26e-01 90.6% 97.3%
3u31A02 3.30.1600.10 Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' 0.56 43.0 3.48e-01 90.6% 44.4%
2lvhA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.56 39.0 4.09e-01 100.0% 91.1%
3gv4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 39.0 3.18e-01 92.5% 39.4%
2qyzA01 3.30.1490.160 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ctc02137 like domains 0.56 46.0 4.60e-01 94.3% 92.5%
2lcqA02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.55 35.0 3.79e-01 98.1% 89.5%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 39.0 3.28e-01 79.2% 88.6%
5jouA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 35.0 3.08e-01 86.8% 43.0%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.54 37.0 3.62e-01 94.3% 63.9%
2ckaA01 3.40.5.120 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.53 40.0 4.12e-01 94.3% 87.8%
2g5gX01 3.40.50.11550 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 40.0 2.87e-01 94.3% 98.5%
5ejrA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 37.0 3.32e-01 83.0% 97.7%
2j82A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.51 39.0 2.75e-01 94.3% 100.0%
2xy1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.60e-01 100.0% 57.7%
6nw1A00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.51 39.0 4.24e-01 88.7% 100.0%
3bc9A01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 3.25e-01 96.2% 48.4%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4519945 101.1.14.4 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › PF31232 0.87 73.0 7.27e-01 90.6% 100.0%
3058113 101.1.14.0 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.75 62.0 6.25e-01 94.3% 92.3%
5031761 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.71 43.0 3.51e-01 98.1% 33.7%
3388528 7056.1.1.0 ↗ few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan 0.67 47.0 5.25e-01 94.3% 97.5%
4933882 284.1.1.1 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.66 55.0 4.55e-01 100.0% 94.3%
5058275 284.1.1.1 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.66 55.0 4.23e-01 100.0% 77.8%
4948028 284.1.1.32 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP26_IF 0.66 54.0 4.51e-01 100.0% 94.3%
5036380 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.65 54.0 4.53e-01 98.1% 95.0%
4583179 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 52.0 5.18e-01 88.7% 100.0%
4961283 101.1.2.935 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_B0008_C 0.64 46.0 3.69e-01 77.4% 76.1%
3217685 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.62 44.0 4.32e-01 94.3% 69.0%
4587586 10.12.1.15 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ARD 0.62 52.0 3.61e-01 94.3% 73.9%
3620613 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 46.0 4.97e-01 94.3% 95.6%
4666101 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 41.0 4.40e-01 94.3% 82.2%
3277720 375.1.1.185 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 0.61 43.0 4.80e-01 92.5% 97.5%
5052735 375.1.1.64 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX 0.60 39.0 4.53e-01 90.6% 100.0%
3622513 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 51.0 4.98e-01 98.1% 100.0%
3983134 223.1.1.113 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 0.58 42.0 3.57e-01 83.0% 63.0%
4008034 223.1.1.113 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 0.57 41.0 3.06e-01 83.0% 37.1%
None — 0.57 36.0 3.85e-01 90.6% 75.6%
3306863 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.56 42.0 3.57e-01 83.0% 74.7%
3237928 206.1.3.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.56 47.0 3.09e-01 100.0% 32.7%
4019073 4154.1.1.0 ↗ beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region 0.56 47.0 3.87e-01 96.2% 66.0%
4953501 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 39.0 4.30e-01 96.2% 100.0%
3911109 386.1.1.290 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451_C 0.55 39.0 3.34e-01 94.3% 47.1%
3750234 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 37.0 3.91e-01 100.0% 91.1%
2664911 2484.1.1.53 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MreB_Mbl 0.54 42.0 3.18e-01 100.0% 33.3%
4943977 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 38.0 4.28e-01 90.6% 100.0%
3977310 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 39.0 3.17e-01 83.0% 60.0%
3206604 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 33.0 3.80e-01 88.7% 97.1%