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NC_042018.1__YP_009612842.1__FDI45_gp098__00098

Bact-Vir

Identity

Accession:: NC_042018 ↗
Kingdom:: phage

Quality

82.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Risingsunvirus› Erwinia_phage_vB_EamM_RisingSun

TaxID: 2026080

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-126

PDB

Domain cluster: rep: NC_007623.1__YP_418148.1__PPEV_gp115__00115__D16-134

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6mw4A01	2.60.120.1290	Mainly Beta › Sandwich › Jelly Rolls ›	0.60	47.0	4.68e-01	83.3%	86.2%
3isrA02	2.60.40.2250	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.58	36.0	3.98e-01	72.2%	78.0%
4b60A02	2.60.40.1290	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.57	45.0	4.23e-01	85.7%	87.2%
3jciA00	2.60.120.950	Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein	0.56	40.0	3.50e-01	73.8%	92.1%
4en2A02	2.60.40.1170	Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B	0.53	39.0	4.20e-01	88.1%	92.3%
4fgmA01	2.60.40.3650	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.53	44.0	4.00e-01	89.7%	93.0%
2mizA00	2.60.40.2900	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.53	40.0	3.79e-01	81.7%	96.8%
2vveA01	2.60.120.770	Mainly Beta › Sandwich › Jelly Rolls ›	0.52	36.0	4.15e-01	73.8%	96.8%
2q1fA01	2.60.120.430	Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin	0.52	41.0	3.78e-01	85.7%	82.6%
3ghmA03	2.60.120.830	Mainly Beta › Sandwich › Jelly Rolls ›	0.52	41.0	4.03e-01	87.3%	78.9%
5z6pA01	2.60.120.430	Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin	0.51	42.0	3.77e-01	89.7%	88.2%
4xaeB00	2.60.120.330	Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain	0.51	39.0	2.98e-01	83.3%	55.9%
4dloA03	2.60.220.50	Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 ›	0.50	38.0	3.47e-01	79.4%	77.2%
1t4wA00	2.60.40.720	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.50	38.0	3.31e-01	79.4%	81.6%
3thdA03	2.60.120.260	Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like	0.50	38.0	3.78e-01	90.5%	74.5%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3227069	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.64	45.0	4.77e-01	83.3%	82.7%
3474024	11.1.1.97 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set	0.58	39.0	4.33e-01	74.6%	89.5%
5049693	4081.1.1.0 ↗	beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related	0.56	48.0	3.87e-01	93.7%	67.3%
5060870	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.56	40.0	4.31e-01	83.3%	89.5%
3228085	10.4.1.21 ↗	beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › DUF7591	0.55	35.0	3.77e-01	81.7%	76.2%
3412365	10.21.1.1 ↗	beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1	0.54	42.0	4.17e-01	83.3%	77.8%
3763155	10.21.1.0 ↗	beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13	0.54	41.0	3.40e-01	87.3%	43.8%
None	—		0.53	40.0	3.37e-01	87.3%	46.5%
4979151	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.53	42.0	3.78e-01	86.5%	94.4%
3285854	4182.1.1.0 ↗	beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like	0.52	39.0	3.88e-01	77.8%	89.9%
1243721	10.21.1.1 ↗	beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1	0.52	41.0	4.05e-01	87.3%	80.0%
3710431	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.51	37.0	4.13e-01	76.2%	98.9%
3485097	10.32.1.172 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DDR1-2_DS-like	0.51	42.0	3.73e-01	89.7%	83.7%
4301595	10.32.1.34 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Lyase_N	0.51	41.0	3.69e-01	85.7%	76.6%
1177377	10.32.1.34 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Lyase_N	0.50	40.0	3.63e-01	87.3%	77.2%
3715590	10.12.1.1 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding	0.50	38.0	3.45e-01	96.0%	58.4%

D2 medium residues 151-194

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3cqxC00	1.20.58.890	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.62	52.0	4.37e-01	100.0%	82.7%
1uf9A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.60	38.0	2.51e-01	72.7%	14.1%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4129499	4095.1.1.1 ↗	alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N	0.51	33.0	2.60e-01	72.7%	24.8%