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NC_042018.1__YP_009612879.1__FDI45_gp135__00135

Bact-Vir

NC_042018.1__YP_009612879.1__FDI45_gp135__00135

Identity

Accession:
NC_042018 ↗
Kingdom:
phage

Quality

65.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Risingsunvirus› Erwinia_phage_vB_EamM_RisingSun

TaxID: 2026080

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-120
PDB
Domain cluster: rep: MN988515.1__QIG70124.1__EVB87_024__00024__D3-96
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 31.0 3.06e-01 70.1% 42.2%
5da9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 55.0 3.92e-01 100.0% 88.2%
3fzxA00 2.40.360.20 Mainly Beta › Beta Barrel › YmcC-like fold › 0.60 50.0 4.09e-01 89.7% 94.3%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.60 45.0 4.49e-01 88.0% 76.0%
2daxA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.57 41.0 3.87e-01 74.4% 80.9%
8in8C01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 40.0 3.12e-01 73.5% 41.2%
2ebkA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 39.0 3.85e-01 72.6% 77.3%
1bh3A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.55 43.0 3.27e-01 82.9% 88.6%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.55 38.0 3.82e-01 70.9% 91.5%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.54 37.0 3.73e-01 70.9% 96.7%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 36.0 2.95e-01 70.9% 75.8%
2veoA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 39.0 2.94e-01 81.2% 97.3%
4ibnA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 37.0 3.15e-01 72.6% 67.6%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.52 41.0 3.56e-01 84.6% 68.1%
1ms9A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 44.0 3.19e-01 96.6% 90.0%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 42.0 3.18e-01 94.9% 95.9%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3225806 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 46.0 4.62e-01 74.4% 100.0%
3197622 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.61 47.0 4.97e-01 89.7% 90.5%
184719 3514.1.1.1 ↗ a+b two layers › uncharacterized protein PA1076 › uncharacterized protein PA1076 › uncharacterized protein PA1076 › DUF5064 0.60 45.0 4.49e-01 88.0% 76.0%
4936010 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.59 43.0 3.13e-01 76.1% 79.7%
3920715 2004.1.1.674 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21, AAA_23, SbcC_Walker_B 0.59 53.0 3.47e-01 100.0% 87.1%
4221575 4099.1.1.52 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › FTA2 0.58 41.0 4.28e-01 71.8% 84.8%
4984962 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.57 41.0 3.11e-01 76.1% 76.4%
3588583 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.57 51.0 4.79e-01 100.0% 98.6%
3602062 210.2.1.0 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain 0.56 51.0 4.74e-01 100.0% 86.7%
None — 0.56 41.0 2.74e-01 74.4% 44.4%
5026243 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.56 40.0 3.05e-01 76.1% 71.5%
28449 5084.5.1.11 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.55 43.0 3.26e-01 82.9% 93.1%
4986643 2484.1.1.148 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_5 0.55 40.0 2.90e-01 76.1% 57.1%
3644268 11.8.1.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like › Nakanori 0.54 39.0 3.35e-01 77.8% 84.2%
4960423 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 46.0 3.41e-01 99.1% 80.3%
7600 868.1.1.1 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.52 38.0 3.14e-01 75.2% 93.7%
4015408 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.52 45.0 3.22e-01 97.4% 57.1%
4398068 5.1.2.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N 0.52 44.0 3.25e-01 97.4% 82.5%
4927417 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.52 44.0 3.56e-01 94.9% 72.9%
4015830 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 43.0 2.94e-01 93.2% 93.3%
4019479 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.52 43.0 3.26e-01 94.9% 57.5%
3797649 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 40.0 4.13e-01 88.0% 88.2%
3578584 5.1.8.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.51 36.0 3.71e-01 72.6% 97.3%
4021392 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.50 44.0 3.26e-01 97.4% 69.4%