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NC_042018.1__YP_009612951.1__FDI45_gp207__00207

Bact-Vir

NC_042018.1__YP_009612951.1__FDI45_gp207__00207

Identity

Accession:
NC_042018 ↗
Kingdom:
phage

Quality

67.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 90-180
PDB
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5g47A01 2.60.40.3770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 44.0 4.60e-01 72.5% 97.6%
3c1aA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.61 43.0 3.76e-01 73.6% 55.2%
4rzkA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 38.0 3.92e-01 73.6% 66.7%
4kc3B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 3.99e-01 70.3% 89.8%
2id5D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.86e-01 74.7% 92.6%
2j8hA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 4.11e-01 83.5% 93.9%
4s3nA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 42.0 3.69e-01 89.0% 65.3%
2oz4A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 4.24e-01 84.6% 90.4%
4x83A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.94e-01 83.5% 87.3%
3o4oC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.66e-01 74.7% 97.0%
1fltX00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 4.07e-01 84.6% 91.6%
5hr9A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 46.0 4.42e-01 100.0% 94.4%
4ak1A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 4.03e-01 82.4% 92.3%
6u8yK01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.52 42.0 3.60e-01 100.0% 53.2%
7ahsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.75e-01 72.5% 95.2%
3e82E02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 40.0 3.16e-01 84.6% 45.0%
4bfeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.66e-01 80.2% 97.2%
2oap101 3.30.450.380 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 43.0 3.29e-01 93.4% 64.1%
1bihA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 30.0 3.08e-01 87.9% 58.0%
1bf3A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 35.0 2.60e-01 71.4% 85.8%
7y6oA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.93e-01 83.5% 96.6%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4219507 523.1.1.1 a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C 0.78 56.0 5.64e-01 73.6% 81.1%
4431299 523.1.1.1 a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C 0.77 54.0 5.51e-01 73.6% 81.1%
4388677 523.1.1.1 a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C 0.74 54.0 5.33e-01 74.7% 78.7%
3422937 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.58 35.0 3.99e-01 82.4% 86.7%
3679716 316.1.1.36 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.57 45.0 3.69e-01 86.8% 64.9%
3749793 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.57 39.0 4.01e-01 72.5% 97.8%
3457724 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.56 44.0 3.51e-01 86.8% 56.3%
3922917 2004.1.1.54 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Septin 0.55 43.0 2.94e-01 86.8% 63.0%
3854797 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.55 39.0 3.67e-01 75.8% 94.8%
4129572 2011.2.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.55 44.0 3.25e-01 90.1% 90.1%
4003244 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.55 39.0 2.68e-01 74.7% 21.3%
3834652 7579.1.1.14 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.54 46.0 3.31e-01 96.7% 52.1%
3853657 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 3.61e-01 74.7% 97.3%
3622819 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.53 38.0 3.65e-01 74.7% 100.0%
4952569 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 4.30e-01 82.4% 94.0%
3898447 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.74e-01 81.3% 90.4%
3868054 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 41.0 2.74e-01 84.6% 30.8%
3920150 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.53 40.0 4.21e-01 83.5% 92.5%
3252597 316.1.1.45 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF4269 0.52 46.0 3.69e-01 100.0% 63.8%
1952984 316.1.1.23 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb 0.52 46.0 3.76e-01 100.0% 57.1%
4954467 11.1.1.237 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG4 0.52 41.0 4.25e-01 83.5% 92.9%
2997844 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 3.87e-01 74.7% 96.3%
3655146 221.1.2.0 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.52 39.0 3.93e-01 86.8% 80.0%
3881485 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.52 39.0 3.69e-01 80.2% 82.7%
4939716 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.52 40.0 3.53e-01 85.7% 60.0%
3529819 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.51 40.0 3.83e-01 84.6% 91.4%
3913139 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.51 40.0 3.88e-01 83.5% 89.0%
3233213 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.60e-01 86.8% 66.7%
None 0.51 38.0 2.75e-01 79.1% 84.6%
3860767 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.51 39.0 3.68e-01 83.5% 76.5%
None 0.51 39.0 2.71e-01 84.6% 26.8%
3646061 316.1.1.36 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.51 44.0 3.81e-01 100.0% 71.3%
3273359 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.51 43.0 3.70e-01 100.0% 68.8%
4567489 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.51 35.0 3.21e-01 72.5% 68.8%
3880085 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.50 39.0 3.79e-01 84.6% 81.0%
3913428 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 38.0 3.64e-01 81.3% 100.0%
3912824 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.50 39.0 3.86e-01 84.6% 92.6%
D2 medium residues 1-82_265-287
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 41.0 4.58e-01 99.0% 82.7%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.63 40.0 3.63e-01 97.1% 46.5%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.61 35.0 4.22e-01 96.2% 93.7%
1q42A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 53.0 4.62e-01 99.0% 96.2%
1s0wC01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.57 37.0 4.00e-01 93.3% 76.9%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 33.0 3.92e-01 77.1% 90.8%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 49.0 4.60e-01 98.1% 88.0%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 40.0 3.41e-01 80.0% 88.0%
3o0dA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 40.0 2.93e-01 80.0% 69.8%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 47.0 3.28e-01 99.0% 38.0%
5hl8C00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.53 30.0 3.39e-01 96.2% 73.4%
3g16B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 45.0 4.02e-01 96.2% 74.3%
2psoB02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 40.0 3.40e-01 84.8% 76.4%
2i99A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.51 40.0 3.61e-01 84.8% 91.3%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.51 40.0 3.58e-01 84.8% 86.6%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.51 40.0 2.63e-01 100.0% 19.1%
4ua3A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 44.0 3.74e-01 100.0% 82.8%
3wirA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.50 44.0 3.38e-01 99.0% 51.8%
3pquA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.50 44.0 3.77e-01 98.1% 84.7%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3222814 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.75 55.0 6.10e-01 93.3% 100.0%
5019886 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.72 45.0 5.17e-01 97.1% 86.7%
3963561 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.70 38.0 4.56e-01 92.4% 80.0%
5014318 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 40.0 4.62e-01 91.4% 89.3%
3597443 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.64 41.0 3.60e-01 96.2% 44.7%
3965259 243.3.1.16 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY_2 0.63 36.0 4.18e-01 95.2% 78.4%
395953 3840.1.1.1 a+b two layers › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › PsiB 0.63 34.0 3.15e-01 97.1% 38.6%
5045854 243.5.1.0 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.61 42.0 4.72e-01 97.1% 93.8%
4461912 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.60 42.0 4.23e-01 99.0% 70.0%
3716605 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.58 39.0 3.38e-01 95.2% 45.0%
4945303 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.58 49.0 3.45e-01 94.3% 35.7%
4024970 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 49.0 3.30e-01 98.1% 34.0%
3727921 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 47.0 4.35e-01 96.2% 92.9%
1160758 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.55 31.0 3.63e-01 84.8% 80.3%
3490202 5.1.4.55 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ELYS-bb 0.54 47.0 3.00e-01 98.1% 19.9%
3668884 331.3.1.43 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.54 47.0 3.55e-01 99.0% 72.5%
3934831 5.1.2.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Apyrase 0.54 45.0 3.19e-01 98.1% 29.6%
3538339 331.3.1.4 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › IP_trans 0.53 39.0 2.98e-01 77.1% 88.1%
3608099 11.1.1.114 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › COP-gamma_platf 0.53 47.0 4.10e-01 99.0% 68.1%
3576726 5.1.2.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Apyrase 0.53 45.0 2.95e-01 99.0% 21.5%
4283763 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.53 45.0 3.39e-01 98.1% 87.3%
4962576 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.52 41.0 3.75e-01 85.7% 83.4%
5009289 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.52 41.0 3.85e-01 84.8% 87.5%
2123690 881.1.1.9 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Tli4_C 0.51 36.0 3.18e-01 97.1% 48.7%
4134185 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.51 40.0 3.71e-01 84.8% 67.6%
1160898 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.51 27.0 3.09e-01 83.8% 69.4%
3638019 5.1.5.88 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nucleoporin_N 0.51 45.0 2.93e-01 100.0% 26.2%
4408843 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.51 39.0 3.58e-01 84.8% 85.5%
3474530 2.1.1.27 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rpb8 0.50 39.0 3.40e-01 81.0% 88.4%
3499502 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 41.0 2.76e-01 100.0% 22.1%